1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaaatcccatcaccgtaaaccagtccacgatcttgctccacactcgacgcccgatcccgcacagcacatcgttctgtataaaacccctttttgttcatatctttgtttcttgctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTCACCGACAGCGCGGTGCAGCTTCTGTCACAAATGGGGTATGATCCACGAT
species | Physcomitrella patens |
transcript | PP1S91_37V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTTCCAGCCCCTCAGCCTTCAACAGATCTGTGAGATCGTCAAACTCCAG CTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTCEST: gi|37833447|gb|BJ591459.1|BJ591459
genomic: TGTTCCAGCCCCTCAGCCTTCAACAGATCTGTGAGATCGTCAAACTCCAGgtacaaatcc ... gctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTC
EST: GTCAAACTCCAG CNGGATAGAGTCAGCAAGNGATTGCAAGACCGCCTCATCAACCTGAGGGTCEST: gi|162156138|gb|FC332513.1|FC332513
genomic: GTCAAACTCCAGgtacaaatcc ... gctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTC
EST: TGTTCCAGCCCCTCAGCCTTCAACAGATCTGTGAGATCGTCAAACTCCAG CTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTC
genomic: TGTTCCAGCCCCTCAGCCTTCAACAGATCTGTGAGATCGTCAAACTCCAGgtacaaatcc ... gctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTC
catcgttctgtataaaacccctttttgttcatatctttgtttcttgctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTCACCGACAGCGCGGTGCAGCTTCTGTCACAAATGGGGTATGATCCACGAT
tctttgtttcttgctc CT-rich tract
tgtataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaatcccatcaccgtaaaccagtccacgatcttgctccacactcgacgcccgatcccgcacagcacatcgttctgtataaaacccctttttgttcatatctttgtttcttgctcgtgcagCTGGATAGAGTCAGTAAGCGATTGCAAGACCGCCTCATCAACCTGAGGGTCACCGACAGCGCGGTGCAGCTTCTGTCACAAATGGGGTATGATCCACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT