1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGGATACCGCTGGTCAGGAGAGGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaataatccggatacgtttgtgcacgtggttgtctgttgcatctaacacctctctggatggggctgagtttgattcaattcttaggacttgactg...
species | Physcomitrella patens |
transcript | PP1S91_243V6.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208372871|gb|DC956272.1|DC956272
genomic: CCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208359075|gb|DC957823.1|DC957823
genomic: CCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208367423|gb|DC951313.1|DC951313
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208370470|gb|DC952173.1|DC952173
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCACGGAATCATT GTTGTTTATGATGTGACAGACCNAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208354508|gb|DC953872.1|DC953872
genomic: CCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|67728237|gb|BJ978496.1|BJ978496
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|67571758|gb|BJ944582.1|BJ944582
genomic: CCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|18330928|gb|BJ162934.1|BJ162934
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAG
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGATACCGCTGGTCAGGAGAGGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaataatccggatacgtttgtgcacgtggttgtctgttgcatctaacacctctctggatggggctgagtttgattcaattcttaggacttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG