1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt...
species | Physcomitrella patens |
transcript | PP1S91_243V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208372871|gb|DC956272.1|DC956272
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208359445|gb|DC953998.1|DC953998
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGNAGNAGGTGGTGGATTATGNAACCGCTAAG NCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208359075|gb|DC957823.1|DC957823
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|162261631|gb|FC438064.1|FC438064
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208367423|gb|DC951313.1|DC951313
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208370470|gb|DC952173.1|DC952173
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|67692438|gb|BJ952671.1|BJ952671
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: GGTGGATTATGNAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|162242155|gb|FC415820.1|FC415820
genomic: GGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208381304|gb|DC919194.1|DC919194
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: AAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|162150705|gb|FC327601.1|FC327601
genomic: AAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|162279565|gb|FC455850.1|FC455850
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: TTCGAAGAAGGTGGTGGATTATTAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208362953|gb|DC946878.1|DC946878
genomic: TTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACNAATCAGATCNTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|162173544|gb|FC350118.1|FC350118
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: GAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208354508|gb|DC953872.1|DC953872
genomic: GAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|67728237|gb|BJ978496.1|BJ978496
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAGTCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208373179|gb|DC944892.1|DC944892
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACNANTCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCA-TTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208367873|gb|DC955336.1|DC955336
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208369487|gb|DC952128.1|DC952128
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: GAAGGTGGTGGATTATGNAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|67571758|gb|BJ944582.1|BJ944582
genomic: GAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208395629|gb|DC920247.1|DC920247
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208386592|gb|DC952773.1|DC952773
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATEST: gi|208372194|gb|DC947997.1|DC947997
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: GAAGGTNGTGGATTATGAAACCCGNTAAG GCATTTGCCGATGAGATTGGAATTCCTTTTTTAGAAACAAGTGCAAAGAA
genomic: GAAGGTGGTGGATTATGAAA-CCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA