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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctcgggtttaaaaaatcttggtgttgtcctttaacatcaagtgtcataattttgactcgggtcgttcgcttatcttagtctggtttggactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGCTGTAATGAATCAGAGGTGAAGGCCAATCATAAGCTATTTTTTTGGATAT

Basic information

species Physcomitrella patens
transcript PP1S91_241V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352155|gb|BJ184209.1|BJ184209
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|18374368|gb|BJ205946.1|BJ205946
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|18352251|gb|BJ184305.1|BJ184305
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|100437913|gb|BY961559.1|BY961559
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|100421898|gb|BY957776.1|BY957776
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|162279183|gb|FC455730.1|FC455730
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
EST: gi|208374699|gb|DC932010.1|DC932010
EST:     GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGG                         GCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC
genomic: GGAATGACGAAATTAATCGCGTATCCGTCACTATTGCTCTTCTTCTGTGGgtatgtcctc ... gactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcataattttgactcgggtcgttcgcttatcttagtctggtttggactctgcagGCCATGACAGTCTGTGAACGATAATTCGTTACTTGGGCAGTGTGAGTTTGCTGTAATGAATCAGAGGTGAAGGCCAATCATAAGCTATTTTTTTGGATAT
       ttttgac  putative branch site (score: 3)
     aattttga  TA-rich tract