1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagttttaggttaatgtgtgttttcaattttgcattcacatttcaggctttttcgttggttgcggtctgttgaatctgcattacttctcttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGTAGATATAGAAAGACGTCTACGGATCATGGCTCTATGTGCAGTTCATCC
species | Physcomitrella patens |
transcript | PP1S91_219V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGEST: gi|18370296|gb|BJ201898.1|BJ201898
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGEST: gi|162221495|gb|FC397304.1|FC397304
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGEST: gi|18330873|gb|BJ162879.1|BJ162879
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
aggctttttcgttggttgcggtctgttgaatctgcattacttctcttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGTAGATATAGAAAGACGTCTACGGATCATGGCTCTATGTGCAGTTCATCC
ttacttctctt CT-rich tract
attactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagttttaggttaatgtgtgttttcaattttgcattcacatttcaggctttttcgttggttgcggtctgttgaatctgcattacttctcttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGTAGATATAGAAAGACGTCTACGGATCATGGCTCTATGTGCAGTTCATCC
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