1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaaattgatcgcctcactttcttcacaaagtttgaaaattagggttctgatgaattagggttttaattgagtgaaaggtatggctagatatcttggaatggattgcagaccttttacaatctgggtaatctgttttcggtgaatgcgtacgctgacatttcataatcatctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCAGTGGGTCACCCCTCTTACCTGCTACAGTTGAGGAGTTTCTTCGCGGTA
species | Physcomitrella patens |
transcript | PP1S91_19V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCEST: gi|162235901|gb|FC411644.1|FC411644
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCEST: gi|162157492|gb|FC333750.1|FC333750
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCEST: gi|162246169|gb|FC424437.1|FC424437
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCEST: gi|208380296|gb|DC922718.1|DC922718
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTNGCEST: gi|162235902|gb|FC411645.1|FC411645
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
EST: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAG GCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
genomic: ATCGCGGTGTAGCAAAGGGGGGATCCTCTGGAAAGTGTTCCAAGATTGAGgtgagaaatt ... tctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGC
ggtaatctgttttcggtgaatgcgtacgctgacatttcataatcatctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCAGTGGGTCACCCCTCTTACCTGCTACAGTTGAGGAGTTTCTTCGCGGTA
cgctgac putative branch site (score: 5)
tctcattc putative PPT
atttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaattgatcgcctcactttcttcacaaagtttgaaaattagggttctgatgaattagggttttaattgagtgaaaggtatggctagatatcttggaatggattgcagaccttttacaatctgggtaatctgttttcggtgaatgcgtacgctgacatttcataatcatctcattcagGCCTCTCTGAGACCTACTGACGCTCTGGACGAGAAGACGAAGGACGTTCGCAGTGGGTCACCCCTCTTACCTGCTACAGTTGAGGAGTTTCTTCGCGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG