1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGCGATGATTTGCTTTACTTGAAGGAACAAATGGAAGCTGAGGAGGATGCCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctggatctcttatatgctggatttcatcgggtgtatctaagaactataacaagtttggtgtaagagagcccacttaatggattggcgctgagt...
species | Physcomitrella patens |
transcript | PP1S88_45V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAA AAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATAEST: gi|208368777|gb|DC951343.1|DC951343
genomic: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctg ... aactgagcacAAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATA
EST: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAA AAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATAEST: gi|162207666|gb|FC383543.1|FC383543
genomic: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctg ... aactgagcacAAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATA
EST: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAA AAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATAEST: gi|162267547|gb|FC444298.1|FC444298
genomic: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctg ... aactgagcacAAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATA
EST: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAA AAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATA
genomic: CCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctg ... aactgagcacAAAGCAGCGAGCTTGGTGGACAATGCTGCTGTGCCGACACTTCCTGCTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCGATGATTTGCTTTACTTGAAGGAACAAATGGAAGCTGAGGAGGATGCCGAGCGTTTGCGCCGGCGAACGGAAAAGAGAGCGTTTGCAGCTTTTAAAatatcctctggatctcttatatgctggatttcatcgggtgtatctaagaactataacaagtttggtgtaagagagcccacttaatggattggcgctgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT