1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagagaaactttcgtgatctaaatcaactcgttattctgcaacccgcacactaatttcaaacgagaatgtgatgtcagttccagtttttgagcgtttgtgctaaagcgataaactcctctgtcatgtgatgtgcattcaacag
species | Physcomitrella patens |
transcript | PP1S84_144V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100398455|gb|BY972613.1|BY972613
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|208353098|gb|DC910149.1|DC910149
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100425397|gb|BY958574.1|BY958574
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100387101|gb|BY951500.1|BY951500
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100446389|gb|CJ970688.1|CJ970688
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100370255|gb|BY985320.1|BY985320
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGAEST: gi|100409896|gb|BY974309.1|BY974309
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGA
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100385037|gb|BY987500.1|BY987500
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100385459|gb|BY969796.1|BY969796
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100425973|gb|BY977213.1|BY977213
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100433241|gb|BY960528.1|BY960528
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100419885|gb|BY975897.1|BY975897
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: CAGGAGGATGAGAACCCCCCGGNCAA-TTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTT-AGAGGATGCCGATCACTEST: gi|100447372|gb|CJ971671.1|CJ971671
genomic: CAGGAGGATGAGAACCCCCCGG-CAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACTEST: gi|100359446|gb|BY984258.1|BY984258
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
EST: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCAC AGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
genomic: ACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagag ... cattcaacagAGGCGGAGACAACTGTGGCTAGGACCCAACTTTTAGAGGATGCCGATCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGAACCCCCCGGCAAATTCAGCAATGTGGAAGGCATCACgtacgaagagaaactttcgtgatctaaatcaactcgttattctgcaacccgcacactaatttcaaacgagaatgtgatgtcagttccagtttttgagcgtttgtgctaaagcgataaactcctctgtcatgtgatgtgcattcaacag
- - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG