1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaccgcttcctcgcttatcacatgccattgctattgagatcacgcatcacaatacccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
species | Physcomitrella patens |
transcript | PP1S84_136V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAG TATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGEST: gi|162193122|gb|FC371988.1|FC371988
genomic: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAGgtgagaccgc ... tttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
EST: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAG TATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
genomic: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAGgtgagaccgc ... tttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
acccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
ttcgtttt CT-rich tract
tatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaccgcttcctcgcttatcacatgccattgctattgagatcacgcatcacaatacccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC