Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100415782|gb|BY993001.1|BY993001EST: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCC-------Ggtgagtgagt ... ctct
EST:
gi|100415782|gb|BY993001.1|BY993001EST: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCC-------Ggtgagtgagt ... ctct
EST:
gi|162199322|gb|FC373702.1|FC373702EST: GATAGCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: GATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|18372495|gb|BJ204097.1|BJ204097EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|100384294|gb|BY969425.1|BY969425EST: ATAACCAACCCCACAGATAGCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|100436515|gb|BY961256.1|BY961256EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCC-------Ggtgagtgagt ... ctct
EST:
gi|100436515|gb|BY961256.1|BY961256EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCC-------Ggtgagtgagt ... ctct
EST:
gi|18329966|gb|BJ161972.1|BJ161972EST: ATAACCAACCCCACAGATAGCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|18345682|gb|BJ177725.1|BJ177725EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCC---Ggtgagtgagt ... ctctgtgt
EST:
gi|18345682|gb|BJ177725.1|BJ177725EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCC---Ggtgagtgagt ... ctctgtgt
EST:
gi|162185457|gb|FC362552.1|FC362552EST: GCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: GCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|162176115|gb|FC351883.1|FC351883EST: CACAGATAGCGGGAAGCCG GTATACCACAGCACGGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCC
genomic: CACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCAC-GGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCC
EST:
gi|18325297|gb|BJ157293.1|BJ157293EST: ATAACCAACCCCACAGATAGCGGGAAGCCG GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
13 (upstream exon),
35 (downstream exon)
Score:
6CTCATAACCAACCCCACAGATAGCGGGAAGCCGgtgagtgagt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCGCGGTCGTTTTTGGCTAAGGACTAGATCGGACAAGCGAAGATGGCAACAC
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctcacatcattgcttggtattcgttctgacaaaacatgcgaaactctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCGCGGTCGTTTTTGGCTAAGGACTAGATCGGACAAGCGAAGATGGCAACAC
ttctgac putative branch site (score: 6)
aaaacat TA-rich tract