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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCTCGTCAAGGACGGAGACGAGACCACCACTGTGAGCCTCGACATTCGTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgctaattgacaaggtgaataatctttaaatcagtgtgttgcttcaaaatgtgcatttaagtggttgcggcgcagtcccatcaatctactcatacatttcttctcttctcttttcttttcttttccattcag

Basic information

species Physcomitrella patens
transcript PP1S84_134V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163257|gb|FC339375.1|FC339375
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162169700|gb|FC345237.1|FC345237
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162152233|gb|FC328212.1|FC328212
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162168128|gb|FC343818.1|FC343818
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162162203|gb|FC337985.1|FC337985
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|7147996|gb|AW509918.1|AW509918
EST:     GTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162199562|gb|FC373214.1|FC373214
EST:     TCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: TCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162199322|gb|FC373702.1|FC373702
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGC
EST: gi|162176577|gb|FC353046.1|FC353046
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
EST: gi|162170234|gb|FC347354.1|FC347354
EST:     GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAG                         GTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC
genomic: GTCCCTCGGACGCCATCAACCTCGCCGTGCGATGCAACGTCCCCATTCAGgtatgcgcta ... ttccattcagGTTAACAAGGAGCTAGCTCTAGGGGACGGTGTTCGCGTTGTAAGTGAGCCC