Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18345682|gb|BJ177725.1|BJ177725EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGA GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|100415782|gb|BY993001.1|BY993001EST: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTGA
genomic: ATAACCAACCCCACAGATAGCGGGAAGCC---G-GTGAgtgagtacgt ... ctctgtg
EST:
gi|162176115|gb|FC351883.1|FC351883EST: CACAGATAGCGGGAAGCC---G- GTATACCACAGCACGGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCC
genomic: CACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCAC-GGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCC
EST:
gi|18325297|gb|BJ157293.1|BJ157293EST: ATAACCAACCCCACAGATAGCGGGAAGCC---G- GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|18372495|gb|BJ204097.1|BJ204097EST: CTCATAACCAACCCCACAGATAGCGGGAAGCC---G- GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|100436515|gb|BY961256.1|BY961256EST: CTCATAACCAACCCCACAGATAGCGGGAAGCCGGTGAGTGA
genomic: CTCATAACCAACCCCACAGATAGCGGGAAGCC---G-GTGAgtgagtacgt ... ctctgtg
EST:
gi|162199322|gb|FC373702.1|FC373702EST: GATAGCGGGAAGCC---G- GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: GATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|18329966|gb|BJ161972.1|BJ161972EST: ATAACCAACCCCACAGATAGCGGGAAGCC---G- GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
EST:
gi|100452222|gb|CJ975162.1|CJ975162EST: AACCAACCCCACAGATAGCGGGAAGCCGGTGAGTGA
genomic: AACCAACCCCACAGATAGCGGGAAGCC---G-GTGAgtgagtacgt ... ctctgtg
EST:
gi|100384294|gb|BY969425.1|BY969425EST: ATAACCAACCCCACAGATAGCGGGAAGCC---G- GTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
genomic: ATAACCAACCCCACAGATAGCGGGAAGCCGGTGAgtgagtacgt ... ctctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctcacatcattgcttggtattcgttctgacaaaacatgcgaaactctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCGCGGTCGTTTTTGGCTAAGGACTAGATCGGACAAGCGAAGATGGCAACAC
ttctgac putative branch site (score: 2)
aaaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatggcttcccttgtttcgtcagcgtgcctgacgtcgagcgcaaagtctcacatcattgcttggtattcgttctgacaaaacatgcgaaactctgtgtagGTATACCACAGCACGGGTTGCATTAACAGCCTCCTCCCCTTCCTGTACCCGCGGTCGTTTTTGGCTAAGGACTAGATCGGACAAGCGAAGATGGCAACAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG