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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAACAATGTTCTGCTTGGTGCTCCAACTGGTAGTGGAAAGACTATTTCTTCAGAACTAGCCATTATGCGGCTTTTTAATACATATCCTGATATGAAGgtgaggagtttgtacaatttctttcaagttataactgctttggtcatcaaccttaatccttctgtaggagtttacggactaaattgtatcaaagttattg...

Basic information

species Physcomitrella patens
transcript PP1S84_129V6.1
intron # 31
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S84_129V6.1 (Physcomitrella patens), 5'ss of exon 31
lower sequence: LOC_Os03g11470.1 (Oryza sativa), 5'ss of exon 9
GGATAACAATGTTCTGCTTGGTGCTCCAACTGGTAGTGGAAAGACTATTTCTTCAGAACTAGCCATTATGCGGCTTTTTAATACATATCCTGATATGAAGgtgaggagtttgtacaatttctttcaagttataactgctttggtcatcaaccttaatccttctgtaggagtttacggactaaattgtatcaaagttattg
 || || || || ||  | || ||||||||||| ||||| ||||| |||||| |||||||||| ||  | |  ||||| || ||| | || || |||||||| ||    ||  | | || |  |  || ||  | || ||  |  ||  |  || | |   || |  |                                
CGACAATAACGTACTCTTGGGAGCTCCAACTGGGAGTGGCAAGACGATTTCTGCAGAACTAGCAATGCTTCATCTTTTCAACACACAACCAGACATGAAGgttagttcattaaatacttacaat-gagctaagattgtttctggaattgattttcaacaccctttcag--------------------------------

upper sequence: PP1S84_129V6.1 (Physcomitrella patens), 5'ss of exon 31
lower sequence: GLYMA06G21970.1 (Glycine max), 5'ss of exon 11
GGATAACAATGTTCTGCTTGGTGCTCCAACTGGTAGTGGAAAGACTATTTCTTCAGAACTAGCCATTATGCGGCTTTTTAATACATATCCTGATATGAAGgtgaggagtttgtacaatttctttcaagttataactgctttggtcatcaaccttaatccttctgtaggagtttacggactaaattgtatcaaagttattg-
||| || ||||||||| | || ||||||||||| |||||||| ||||| ||| | || || |||||  | || |||||||||||  | ||||||||||||||  | |  ||       ||| | ||  |    |  |     |   | ||  |   | | | |   |  |||   |   | |     |   ||   ||   
GGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCCATGCTTCGTCTTTTTAATACTCAGCCTGATATGAAGgtttgta-cttaagtttgttcatgcagttagagaaagagcaagaactaaaggtgcttacatattctgatgttactgtcttgagcctaagtgaaagaataaa

upper sequence: PP1S84_129V6.1 (Physcomitrella patens), 5'ss of exon 31
lower sequence: EFJ04356 (Selaginella moellendorffii), 5'ss of exon 2
GGATAACAATGTTCTGCTTGGTGCTCCAACTGGTAGTGGAAAGACTATTTCTTCAGAACTAGCCATTATGCGGCTTTTTAATACATATCCTGATATGAAGgtgaggagtttgtacaatttctttcaagttataactgctttggtc-atcaaccttaatccttctgtaggagtttacggactaaattgtatcaaagttattg
 ||| | ||||||||||| || ||||||||||| |||||||| || || || ||||| || |||||  | || |||||||| ||| | || ||||||||||| |    ||| |      | |||  || | |    |||  |  |  |  || | |                                             
TGATCATAATGTTCTGCTGGGCGCTCCAACTGGGAGTGGAAAAACAATATCCTCAGAGCTTGCCATGCTTCGCCTTTTTAACACACAACCAGATATGAAGgtaacatctttctg-----tttttagagatgtcgtagctaagaactgtgcacttcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256070|gb|FC431243.1|FC431243
EST:     TTCAGAACTAGCCATTATGCGGNCTTTTTAATACATATCCTGATATGAAG                         GTCATTTACATTGCTCCACTTAAGGCACTTGTCAGGGAGAGAATGGATGGC
genomic: TTCAGAACTAGCCATTATGCGG-CTTTTTAATACATATCCTGATATGAAGgtgaggagtt ... gatgtggcagGTCATTTACATTGCTCCACTTAAGGCACTTGTCAGGGAGAGAATGGATGGC