1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tatagagggccatctctactctgaatcgtcatttttcgcagaatgcaactcggattatctaatttgtgtcgtaaacatctggattctgtgtcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATTGCAAAAGCCACTCGGACGTTACGAATGGCGTATGAACTGCAGCCTAAAT
species | Physcomitrella patens |
transcript | PP1S84_125V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAG GAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATTEST: gi|162167522|gb|FC344213.1|FC344213
genomic: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAGgtagtttcac ... tcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATT
EST: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAG GAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATTEST: gi|162157223|gb|FC332857.1|FC332857
genomic: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAGgtagtttcac ... tcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATT
EST: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAG GAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATT
genomic: GCCAGGCTAAGGTTTCCATATGTGTGGCAGATTACCCAGCTGTCAACCAGgtagtttcac ... tcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATT
caactcggattatctaatttgtgtcgtaaacatctggattctgtgtcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATTGCAAAAGCCACTCGGACGTTACGAATGGCGTATGAACTGCAGCCTAAAT
atctaat putative branch site (score: 6)
tcttgttt putative PPT
attatctaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagagggccatctctactctgaatcgtcatttttcgcagaatgcaactcggattatctaatttgtgtcgtaaacatctggattctgtgtcttgtttagGAATGGACAAATGACGAGGCAGAAGCAGACATGGAGTCGATTAACGCAATTGCAAAAGCCACTCGGACGTTACGAATGGCGTATGAACTGCAGCCTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG