1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggatagtctccactgacatcgaaagaattgcgtggttcgtgtcttataagaactgtaatcttacaatcggtattgtgtattgtgcaactttttcatgcagATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACCGGTCCTGACCTGGAGCTGGACCGAAGAATCATTCCTTGAAGGAGGAGCG
species | Physcomitrella patens |
transcript | PP1S84_106V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTGACAAGATGTTGTAGGCGCTGGAAGAATAGTTTTTCAAAGGCACAAG ATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACCEST: gi|100405815|gb|BY973868.1|BY973868
genomic: AGTGACAAGATGTTGTAGGCGCTGGAAGAATAGTTTTTCAAAGGCACAAGgtacatttgt ... tttcatgcagATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACC
EST: AGTGACAAGATGTTGTAGGCGCTGGAAGAATAGTTTTTCAAAGGCACAAG ATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACC
genomic: AGTGACAAGATGTTGTAGGCGCTGGAAGAATAGTTTTTCAAAGGCACAAGgtacatttgt ... tttcatgcagATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACC
ataagaactgtaatcttacaatcggtattgtgtattgtgcaactttttcatgcagATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACCGGTCCTGACCTGGAGCTGGACCGAAGAATCATTCCTTGAAGGAGGAGCG
atcttac putative branch site (score: 3)
ctttttcat putative PPT
taatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatagtctccactgacatcgaaagaattgcgtggttcgtgtcttataagaactgtaatcttacaatcggtattgtgtattgtgcaactttttcatgcagATATTTACGGTGAGGTGCGGTACCATGAGGTTTCAGTTACAAGTGATCACCGGTCCTGACCTGGAGCTGGACCGAAGAATCATTCCTTGAAGGAGGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG