1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCGATCTCACCCCGAAGATTTTCTTCCTTTTATTGGTGGAGACCTGGAACGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcaccacgcttaaccatctacttgccaatttactacctttctgtttcttggatcaatttcttaccttaaccatccattgcgtgaatttccag
species | Physcomitrella patens |
transcript | PP1S83_64V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|67696571|gb|BJ956804.1|BJ956804
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|208346768|gb|DC913049.1|DC913049
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|208393727|gb|DC928647.1|DC928647
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|37823821|gb|BJ581887.1|BJ581887
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|37832953|gb|BJ590965.1|BJ590965
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTTEST: gi|208356800|gb|DC926811.1|DC926811
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
EST: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAG GGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
genomic: CGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcac ... gaatttccagGGAGGTCGAAGCAACTGCGTCTTGGGGCGGTCAGCTGGAGCTGGGAGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGATCTCACCCCGAAGATTTTCTTCCTTTTATTGGTGGAGACCTGGAACGGGAGATTGAGGGCAATGATCCACAGTCCAAGTTTGAAACTTATTGCAGgtgaaggcaccacgcttaaccatctacttgccaatttactacctttctgtttcttggatcaatttcttaccttaaccatccattgcgtgaatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT