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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcgaagggtttcttcctatctctttacatatacgtatgcgaacttcgtgtgcatcacggacgtcatttattgacatcctctgtcagatatttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAGTAAGGGAAGTAGCAGTCCTGTCTCTACAGGGGCTTTCTTCAAGTCCCGG

Basic information

species Physcomitrella patens
transcript PP1S83_49V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67570112|gb|BJ942936.1|BJ942936
EST:     TCTTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTG                         GAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
genomic: TCTTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTGgtgagtttat ... tttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
EST: gi|162219043|gb|FC394938.1|FC394938
EST:     TCGTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTG                         GAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
genomic: TCTTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTGgtgagtttat ... tttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
EST: gi|162243976|gb|FC422318.1|FC422318
EST:     TCGTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTG                         GAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
genomic: TCTTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTGgtgagtttat ... tttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
EST: gi|162246050|gb|FC424396.1|FC424396
EST:     TCGTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTG                         GAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG
genomic: TCTTATAGGGATCGTGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTGgtgagtttat ... tttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtgtgcatcacggacgtcatttattgacatcctctgtcagatatttcttgtagGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAGTAAGGGAAGTAGCAGTCCTGTCTCTACAGGGGCTTTCTTCAAGTCCCGG
                       tattgac  putative branch site (score: 2)
                                           tatttctt  putative PPT
                  tcatttatt  TA-rich tract