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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagggatccctgcgcgaagggtttcttcctatctctttacatatacgtatgcgaacttcgtgtgcatcacggacgtcatttattgacatcctctgtcagATATTTCTTGTAGGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAGTAAGGGAAGTAGCAGTCCTGTCTCTACAGGGGCTTT

Basic information

species Physcomitrella patens
transcript PP1S83_49V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575720|gb|BJ948544.1|BJ948544
EST:     CTTATAGGGATCGTGGTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTG                         ATATTTCTTGTAGGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGG
genomic: CTTATAGGGATCGT-GTTGTATTTTTCTCTGCGATAGCGGTTTTACTCTGgtgagtttat ... cctctgtcagATATTTCTTGTAGGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtatgcgaacttcgtgtgcatcacggacgtcatttattgacatcctctgtcagATATTTCTTGTAGGAAGCCGCTTTTCATATAAGTCATCATGGCGAATGAGGGTTTCAAGTTGAGTAAGGGAAGTAGCAGTCCTGTCTCTACAGGGGCTTT
                                    tattgac  putative branch site (score: 2)
                                            tcctctgtc  CT-rich tract
                               tcatttatt  TA-rich tract