1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTCGAGTTGTGTAGCCTCTGAGCTTTATGGCGGGTCTTCTTCTATCGGGATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAGgtatgcctcttctttcaaccttcgtcttatccctcttttgattgtagatgtagtgtggttagtgcacggcgactgaaggatttggaaatggaaatgcacgccgtcttcgtacagtgattgtggatttagagggtggggacgttttgcag
species | Physcomitrella patens |
transcript | PP1S83_48V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAG ATTTTCATGTAGCTATCGACTGCGGGGGCTACCTTAATTTCTCAAACAGTAEST: gi|18347624|gb|BJ179671.1|BJ179671
genomic: ATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAGgtatgcctct ... cgttttgcagATTTTCATGTAGCTATCGACTGCGGGGGCTACCTTAATTTCTCAAACAGTA
EST: ATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAG ATTTTCATGTAGCTATCGACTGCGGGGGCTACCTTAATTTCTCAAACAGTA
genomic: ATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAGgtatgcctct ... cgttttgcagATTTTCATGTAGCTATCGACTGCGGGGGCTACCTTAATTTCTCAAACAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGAGTTGTGTAGCCTCTGAGCTTTATGGCGGGTCTTCTTCTATCGGGATTGTGGTTTTTAGGTCTTCTGCGTTCGTCATTGGCGGGAGGACCAGGAGgtatgcctcttctttcaaccttcgtcttatccctcttttgattgtagatgtagtgtggttagtgcacggcgactgaaggatttggaaatggaaatgcacgccgtcttcgtacagtgattgtggatttagagggtggggacgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA