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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttcatgtgctgaattcttgactatgccttctttattttggaattgggattctaagatttgtttaagttctctttattgaggattctaagatttgtttaattgaggattctgtacgtgaatgggaaacgcagAAAATCGAACCATATTGATTTGGCCAGGAACTGCCGGGAGTAACCCACCTGCTGGGACCCGAATGCACACCAAATCAGTCTTCGTAGATCCACAAGTAAA

Basic information

species Physcomitrella patens
transcript PP1S83_30V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833540|gb|BJ591552.1|BJ591552
EST:     GGACTATCCGAAGTGCAGTCCGGAAAGAGCTTGTTCGTGACGTAGGTGAG                         AAAATCGAACCATATTGATTTGGCCAGGAACTGCCGGGAGTAACCCACCTG
genomic: GGACTATCCGAAGTGCAGTCCGGAAAGAGCTTGTTCGTGACGTAGGTGAGgtaatatttc ... ggaaacgcagAAAATCGAACCATATTGATTTGGCCAGGAACTGCCGGGAGTAACCCACCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggattctaagatttgtttaattgaggattctgtacgtgaatgggaaacgcagAAAATCGAACCATATTGATTTGGCCAGGAACTGCCGGGAGTAACCCACCTGCTGGGACCCGAATGCACACCAAATCAGTCTTCGTAGATCCACAAGTAAA
                 gtttaat  putative branch site (score: 4)
         taagatttgtttaatt  TA-rich tract