1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGATAATATTGAGACTATCCGCAAGAGGTTTAAGGTTTTCATTGATTCTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttccatcgcagattttatacaaaattgacctgcatatattcaaagaagatacatgtgagatagagcagaagtggaatgctattatgtcgatac...
species | Physcomitrella patens |
transcript | PP1S83_28V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAG ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTCEST: gi|18338935|gb|BJ170961.1|BJ170961
genomic: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttc ... ttttccccagATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
EST: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAG ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTCEST: gi|18333942|gb|BJ165958.1|BJ165958
genomic: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttc ... ttttccccagATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
EST: GGCCACTACGAAGAATGCGGCAAGGTTCACAAG ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTCEST: gi|162173421|gb|FC349800.1|FC349800
genomic: GGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttc ... ttttccccagATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
EST: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAG ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTCEST: gi|37843731|gb|BJ601739.1|BJ601739
genomic: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttc ... ttttccccagATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
EST: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAG ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
genomic: CTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttc ... ttttccccagATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATAATATTGAGACTATCCGCAAGAGGTTTAAGGTTTTCATTGATTCTAGCCTACCGGTTGTGGGCCACTACGAAGAATGCGGCAAGGTTCACAAGgtaaagtttccatcgcagattttatacaaaattgacctgcatatattcaaagaagatacatgtgagatagagcagaagtggaatgctattatgtcgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaga