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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttttcacttcacttttgatgtctctagattctaataaaggttcaaagatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtag

Basic information

species Physcomitrella patens
transcript PP1S83_25V6.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 23
lower sequence: LOC_Os04g57140.2 (Oryza sativa), 5'ss of exon 22
TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttttcacttcacttttgatgtctctagattctaataaaggttcaaagatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtag
|||| ||||| ||||||||||| || |||||||| ||  | |||||||| ||| ||||||| ||||||||||||||||| |||||  | |||||||||  ||  | || |  | | ||||  ||     | ||| | ||         |||    |   |   || ||    |  |  |   |  ||  |    ||  |  |||| |     |     |||                                                       
TGCTGATGAGTGATTCTCTTGGAGGCAATGCGAAAACCTTGATGTTTGTGAATGTCTCACCAGCAGAGTCCAACCTGGAGGAGACTTACAATTCACTCATgtatg-aatttctattgctccagta----tacaagtctt---------tttgtgttatgcccctggtgctcgtgtacacctgttgagtatt---gactggcattttttttcctccatcttgcag----------------------------------------------------

upper sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 23
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 21
TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttttcacttcacttttgatgtctctagattctaataaaggttcaa-agatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtag
|||| ||||| |||||||| || || |||||||||||  | |||||||| ||| | ||||| |||||||| ||| |||| |||||  | || || ||   ||  |||  |    |||    ||   || |  |        |  | | ||||   ||  |||||  |  || |       |||   |  |  | | ||     |||| | ||                                                                 
TGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactt----tggtcactgagtctatgta--------ccctgtcttttggatttgctttttgtcactgtttccatcaatgtggtcttgatatattagcttttccatat-----------------------------------------------------------------

upper sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 23
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 22
TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttttcacttcacttttgatgtctctagattctaataaaggttcaaagatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtag
||||||||||||| || || ||||| ||||| ||||| ||||||||||| ||  | || ||||| |||||||| ||||| ||||| || || || || |||| || ||  |   |     ||||   ||      |||  |||||  | ||||                                                                                                                           
TGCTCATGAGCGACTCGCTGGGTGGCAATGCCAAGACGCTCATGTTTGTCAACGTGTCCCCGGCGGAGTCCAATCTGGAGGAGACTCACAACTCGCTATGgtaagcaagcgcgatccagtgtgtggattgatggatttgttctttgctctttccgcag----------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 23
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 22
TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttt-tcacttcacttttgatgtctctagattctaataaaggttcaaagatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtag
||||||||||||| || || ||||| || || ||||| ||||||||||| ||  | || ||||| |||||||| ||||| ||||| || || || || |||| || ||  |   |     ||||   ||      |||  |||||  | || || |                                                                                                                         
TGCTCATGAGCGACTCGCTGGGTGGCAACGCCAAGACGCTCATGTTTGTCAACGTGTCCCCGGCGGAGTCCAATCTGGAGGAGACTCACAACTCGCTATGgtaagcaagcgcgatccagtgtgtggattgatggatttgttctttgctcttgtcgcag-----------------------------------------------------------------------------------------------------------------------