1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttcttttcctctccgtgaggttacttcggaaacggaatgttcttgttgcttctgaagaagtgctttgatacgaagctatagtgtggaaaactggcagTGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTTTTATCCGTCTTGATCGGAAACAGTATTCCCG
species | Physcomitrella patens |
transcript | PP1S83_248V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCT TGCACGGTATTGGACTTCCAGCCCCAAANTCCTGAGGATCCCATGACGGTTEST: gi|67572762|gb|BJ945586.1|BJ945586
genomic: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCTgtaagtggcg ... aaactggcagTGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTT
EST: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCT TGCACGGTATTGGACTTCCAGCCEST: gi|208349270|gb|DC906384.1|DC906384
genomic: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCTgtaagtggcg ... aaactggcagTGCACGGTATTGGACTTCCAGCC
EST: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCT TGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTT
genomic: TCCAACATTTTATGACTATCGTCAAACCCGTAGGGAATGGCGATTTGCCTgtaagtggcg ... aaactggcagTGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTT
ttgttgcttctgaagaagtgctttgatacgaagctatagtgtggaaaactggcagTGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTTTTATCCGTCTTGATCGGAAACAGTATTCCCG
ctttgat putative branch site (score: 3)
tttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcttttcctctccgtgaggttacttcggaaacggaatgttcttgttgcttctgaagaagtgctttgatacgaagctatagtgtggaaaactggcagTGCACGGTATTGGACTTCCAGCCCCAAAATCCTGAGGATCCCATGACGGTTTTATCCGTCTTGATCGGAAACAGTATTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT