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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCACTTGCGAGGCCAACACTGCTCTGACGATCACCCTCAGCACTGGCGCCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttcttcctgtttgggtcttttgtcgctttgcatgctgttctcttacttgattgagatcgcgtggttggattgggagctaccgggatgtgtgag...

Basic information

species Physcomitrella patens
transcript PP1S83_246V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251008|gb|BG361911.1|BG361911
EST:     CCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAAGGACAAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGC
genomic: CCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAA-Tgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGC
EST: gi|162210472|gb|FC386560.1|FC386560
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162267936|gb|FC444017.1|FC444017
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162211725|gb|FC388013.1|FC388013
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|7067377|gb|AW497232.1|AW497232
EST:     TTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: TTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162201685|gb|FC377996.1|FC377996
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162217346|gb|FC392814.1|FC392814
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|19790886|gb|BQ042109.1|BQ042109
EST:     CCCTGGTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTTCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162222358|gb|FC397144.1|FC397144
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162248830|gb|FC422031.1|FC422031
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67723909|gb|BJ974168.1|BJ974168
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162276504|gb|FC452481.1|FC452481
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|22492734|gb|BU052657.1|BU052657
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162222194|gb|FC397630.1|FC397630
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162211724|gb|FC388012.1|FC388012
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162279340|gb|FC455263.1|FC455263
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162266571|gb|FC441970.1|FC441970
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162271651|gb|FC448576.1|FC448576
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162246983|gb|FC424783.1|FC424783
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162272395|gb|FC448228.1|FC448228
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162225493|gb|FC401232.1|FC401232
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162226997|gb|FC403354.1|FC403354
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162210833|gb|FC387243.1|FC387243
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67725665|gb|BJ975924.1|BJ975924
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162273808|gb|FC449739.1|FC449739
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162260238|gb|FC435541.1|FC435541
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162222193|gb|FC397629.1|FC397629
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162212675|gb|FC388787.1|FC388787
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162258414|gb|FC434421.1|FC434421
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162202909|gb|FC380294.1|FC380294
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67725814|gb|BJ976073.1|BJ976073
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67727728|gb|BJ977987.1|BJ977987
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162248082|gb|FC420087.1|FC420087
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162248829|gb|FC422030.1|FC422030
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162228576|gb|FC405292.1|FC405292
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162265886|gb|FC442889.1|FC442889
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67717298|gb|BJ967557.1|BJ967557
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|18331890|gb|BJ163902.1|BJ163902
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACT
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACT
EST: gi|162260129|gb|FC435848.1|FC435848
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67697314|gb|BJ957547.1|BJ957547
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162213683|gb|FC390298.1|FC390298
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162276661|gb|FC452239.1|FC452239
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162222357|gb|FC397143.1|FC397143
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162200755|gb|FC378419.1|FC378419
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162249825|gb|FC427602.1|FC427602
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|6102358|gb|AW126828.1|AW126828
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162272396|gb|FC448229.1|FC448229
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|67722030|gb|BJ972289.1|BJ972289
EST:     CTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162219730|gb|FC395934.1|FC395934
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162211324|gb|FC387554.1|FC387554
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162262506|gb|FC439523.1|FC439523
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|208397880|gb|DC916187.1|DC916187
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162217269|gb|FC392009.1|FC392009
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|19779032|gb|BQ039398.1|BQ039398
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162217270|gb|FC392010.1|FC392010
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162249826|gb|FC427603.1|FC427603
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162266218|gb|FC441942.1|FC441942
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162202584|gb|FC378955.1|FC378955
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162210122|gb|FC386360.1|FC386360
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162210832|gb|FC387242.1|FC387242
EST:     CCCTGTTGTTCTTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162213239|gb|FC389319.1|FC389319
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|7046894|gb|AW476838.1|AW476838
EST:     CCCTGTTGTTCATCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162211325|gb|FC387555.1|FC387555
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|18340200|gb|BJ172228.1|BJ172228
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162259254|gb|FC435664.1|FC435664
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162272637|gb|FC448575.1|FC448575
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162228575|gb|FC405291.1|FC405291
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162243020|gb|FC417868.1|FC417868
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
EST: gi|162228870|gb|FC404182.1|FC404182
EST:     CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAAT                         GTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC
genomic: CCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 142

AGTCACTTGCGAGGCCAACACTGCTCTGACGATCACCCTCAGCACTGGCGCCCTGTTGTTCCTCGGCCGCTTTGTCTTCCTCCCCTTCCAGAGGGACAATgtacgatttc ... gtctatgcagGTCTCGAGGCAAGGACTGCCCGTGCAGAACGGAGTGACTCACTTCGACGCCGGTGACAGCCGTGCTCAGGAGGTGACCAGCTTTTTGAAGACCAACGACC




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