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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTAACTTGGTCGGCTGCATCTACCTCAACCGCCTGCTCCCGAAAGCAAAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgttcgcatccacgacaagctttctgtcccgattgccatgaacttgtttccacggaactaattcgaggaacatgtggttcaaatcacatcgaaa...

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.8
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     CTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: CTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTTAACTTGGTCGGCTGCATCTACCTCAACCGCCTGCTCCCGAAAGCAAAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgttcgcatccacgacaagctttctgtcccgattgccatgaacttgtttccacggaactaattcgaggaacatgtggttcaaatcacatcgaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT