Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAGGAATGCTGGGGACGGCTCTCCTGCTGGAGGAGGTACATGACACAGAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccgtctcctagaaaagttctctattcatataatttttgcattccacaaccccctcctctcttttaattttttaatttcttttacagccattaatttagctgtaatgttcaaacaacgttaaatgcgtacaaaaagtatgatgtgattattaaggaatgtgggatatatcag

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354636|gb|DC918690.1|DC918690
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162198661|gb|FC373455.1|FC373455
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208367002|gb|DC947764.1|DC947764
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162228234|gb|FC404950.1|FC404950
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37835668|gb|BJ593680.1|BJ593680
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162245635|gb|FC423318.1|FC423318
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162154039|gb|FC330274.1|FC330274
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|15728138|gb|BI740638.1|BI740638
EST:     TTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: TTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|67694439|gb|BJ954672.1|BJ954672
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGACACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAATGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162209828|gb|FC385970.1|FC385970
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162179592|gb|FC355234.1|FC355234
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37839903|gb|BJ597911.1|BJ597911
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACNTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18338874|gb|BJ170900.1|BJ170900
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162170834|gb|FC347448.1|FC347448
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18341266|gb|BJ173300.1|BJ173300
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162196271|gb|FC374353.1|FC374353
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162192158|gb|FC368307.1|FC368307
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18340655|gb|BJ172684.1|BJ172684
EST:     TGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: TGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162154038|gb|FC330273.1|FC330273
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37833923|gb|BJ591935.1|BJ591935
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162211310|gb|FC387540.1|FC387540
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208395989|gb|DC915749.1|DC915749
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18337249|gb|BJ169273.1|BJ169273
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162202568|gb|FC380057.1|FC380057
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18335371|gb|BJ167390.1|BJ167390
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162175972|gb|FC352378.1|FC352378
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162205298|gb|FC380980.1|FC380980
EST:     GTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162172926|gb|FC348931.1|FC348931
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162154995|gb|FC331413.1|FC331413
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208379631|gb|DC927128.1|DC927128
EST:     GAGGNAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|67694203|gb|BJ954436.1|BJ954436
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208387218|gb|DC945517.1|DC945517
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162203415|gb|FC378823.1|FC378823
EST:     ATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: ATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162202407|gb|FC379194.1|FC379194
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162179591|gb|FC355233.1|FC355233
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162222136|gb|FC397364.1|FC397364
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162163028|gb|FC338418.1|FC338418
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162210249|gb|FC386734.1|FC386734
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162170771|gb|FC347385.1|FC347385
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162196272|gb|FC374354.1|FC374354
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162279646|gb|FC455892.1|FC455892
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37833729|gb|BJ591741.1|BJ591741
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGGGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208385455|gb|DC956653.1|DC956653
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162149977|gb|FC326508.1|FC326508
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37838335|gb|BJ596343.1|BJ596343
EST:     CTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAACCAAAGGGAGTTTATCGAGGGCA
genomic: CTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162152925|gb|FC329227.1|FC329227
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162170833|gb|FC347447.1|FC347447
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162198704|gb|FC374824.1|FC374824
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162208266|gb|FC384370.1|FC384370
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|15729088|gb|BI741131.1|BI741131
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162188509|gb|FC365107.1|FC365107
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162219803|gb|FC396215.1|FC396215
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162160009|gb|FC335671.1|FC335671
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|18340703|gb|BJ172733.1|BJ172733
EST:     TCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: TCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162175971|gb|FC352377.1|FC352377
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162205297|gb|FC380979.1|FC380979
EST:     GTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208384149|gb|DC919663.1|DC919663
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCGGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37827216|gb|BJ585228.1|BJ585228
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|67692666|gb|BJ952899.1|BJ952899
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208375875|gb|DC926967.1|DC926967
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208378525|gb|DC927222.1|DC927222
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|208360484|gb|DC950058.1|DC950058
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37838277|gb|BJ596285.1|BJ596285
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAACCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|162245636|gb|FC423319.1|FC423319
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37823273|gb|BJ581339.1|BJ581339
EST:     TGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: TGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
EST: gi|37825532|gb|BJ583598.1|BJ583598
EST:     GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAG                         GGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA
genomic: GAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccg ... gatatatcagGGATCCACTTGAAGAGACCAGGGAGGAGCCAAAGGGAGTTTATCGAGGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAAGGAATGCTGGGGACGGCTCTCCTGCTGGAGGAGGTACATGACACAGAGGAAAGGTTTGACTCGACATGGTCTGGAACCTTCTGGAAACACTGCAGgtgcgcaccgtctcctagaaaagttctctattcatataatttttgcattccacaaccccctcctctcttttaattttttaatttcttttacagccattaatttagctgtaatgttcaaacaacgttaaatgcgtacaaaaagtatgatgtgattattaaggaatgtgggatatatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG