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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaatcatcatagttttaggacttatgaggtacccgtccttgatgatctctaaaatagaccttcacgagtcatgtaagggaccttgttatgatgatgcagGTGGCAGTTTCAATGCAGAGGAGATCGATTCATTCGTGAAGCTCAACAAGTACCCTCTTGTCACCGTATTGAATTCCAAGAATGCCAATTTGGTCTATGC

Basic information

species Physcomitrella patens
transcript PP1S77_54V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256398|gb|FC432408.1|FC432408
EST:     TCCATTTATTGCACTGTGCAAGCAAGAACCCGAGCGTTTGTCTGTGTTTG                         GTGGCAGTTTCAATGCAGAGGAGATCGATTCATTCGTGAAGCTCAACAAGT
genomic: TCCATTTATTGCACTGTGCAAGCAAGAACCCGAGCGTTTGTCTGTGTTTGgtatgggttc ... gatgatgcagGTGGCAGTTTCAATGCAGAGGAGATCGATTCATTCGTGAAGCTCAACAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctaaaatagaccttcacgagtcatgtaagggaccttgttatgatgatgcagGTGGCAGTTTCAATGCAGAGGAGATCGATTCATTCGTGAAGCTCAACAAGTACCCTCTTGTCACCGTATTGAATTCCAAGAATGCCAATTTGGTCTATGC
  ctctaaa  putative branch site (score: 3)
     taaaataga  TA-rich tract