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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat...

Basic information

species Physcomitrella patens
transcript PP1S77_42V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g03540.1 (Oryza sativa), 5'ss of exon 2
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATT-CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcatta-ccagaaagcttgcctcggagatgctcccagat
       || ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || ||   || | |  | ||    || | | |   ||  |  |  |  || |||      |      ||  | | ||| | | | |       ||   | ||| | | || || || |   |     || |       
GACACTCGTCTTCTATAAGGGCAGGGCGCCTAATGGCCAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAACGCGCCGCCACAGgtat-atacatataccgatttcactagctaattggtttcttaattttc-tctgcatgctagctagctctacataaactagcaaactggttccatgcttgata------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g02300.1 (Oryza sativa), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat----------
      |||||||||||| || || || ||||||||| ||||||||||||||||||||| ||| || ||||||  |  |||   |  |||| |   | |    |   |    | |  |  |    | ||  |     |  ||     |   || |   ||| ||   |    |    | |    | ||| | |     ||          
------CTACAAGGGCCGCGCCCCCCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGACGACCCCG-CCACCGACACCGCCGCCGCCACACCCACGgtacgtacgtacct---gctccggctagccggccggccggccgccggtacatgtagcgacaattaattattagagaggaagaagatgatgaatgaagtggtgg

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: 13113.m00212 (Oryza sativa), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacg-tcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
 || ||||||   ||||| || || || ||||||||||||||||||||||||||||||| ||| || || |||| | || |  |       |  | |   ||| | ||||     | | ||  |  | ||  || ||||    |    || ||||   |   | | |  ||       |||  |   |  |        | 
CGTCTTCTACCGCGGCCGCGCCCCCCACGGCCAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACTCCCAGTCTGCCTCCAGCgtaagctcgctagctccccttctctcctcctccagagtggattttaaactctcgagtggacgtacgtcccctcgttatttgtatgtcaattaaatgggta-

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 2
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCA-GGCATTCCGCG-GTTTCGATgtacgtcgccgttccacattt---ccaaccccctcacagtgttcgtgtccctttcgat-cagtgttgcattaccagaaagcttgcctcggagatgctcccagat
       || |||||||||||||| || ||  ||||||||||| | ||||||||||||||||||| ||| || ||   |  | |  | ||||   | |  || |  || ||  | |  |||    ||||   ||   ||  | | |  || |  || ||||  | | |    |||  ||     |    |||        ||||        
GACACTCGTCTTCTACAAGGGCCGTGCCCCCAATGGCCAGAAGTCGGACTGGATCATGCACGAGTACCGCCTCGAGACCAACGAAAACGGCACCACACCTgtatgcatatat-ttgatgtttggaatttgctccggtccaataaaaaggtac-cgtaccttatggtaccaaattgtttttt---atcatttgatctaacaatgcc-------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os06g33940.1 (Oryza sativa), 5'ss of exon 3
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgt-tccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
          || ||||||   ||| ||||||| || ||| ||||||||||||||||||||||||||| ||| || ||| | | ||||   |   |||  ||| |  || ||  |     | |  | || |   ||  |  || |       ||   | ||   |    | |  |       | |  | || ||   ||    || |   
GAAGACCCTCGTCTTCTACGTCGGCAGGGCGCCCCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACCAAGACAACGTCGATGTCCA-Ggtatatatatatatatatatatatatatatttgacatcagcaaaaaccatatgcaacattaagttcacgatatac------atacttagcatccatgaaatgccaa---

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g15340.1 (Oryza sativa), 5'ss of exon 3
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccc------tttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
         |||||||||||  ||  |||| || || ||| ||||||||||||||||||||||||||| ||| || ||||||| |||    |   ||| ||||    |    |  |    |     ||||| | |    |      | ||  ||          |  ||| | ||  |  ||    ||| | |||| | |||  |||   |||  
GAAGACGCTGGTGTTCTACACCGGAAGGGCCCCGCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACGACGACAATGTCGACGTCC-CGgtaagcaccatcaccattctaatcgatttcaagctagatagtttagatcaagtagagttgagctctgattaatggcggtttcttggaatg-ttgcattgga--tgcgtgcag--

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g01330.1 (Oryza sativa), 5'ss of exon 2
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgt-tgcattaccagaaagcttgcctcggagatgctcccagat-------------
      ||||||||||||||| || || ||  | |||| |||||||||||||||||| ||||||| ||| ||  |      ||| |   ||  || |   |  |   | | | ||    |||| | | | |  || ||  | | ||  |    ||||   | | | | ||   ||| | | |  ||   ||   |||  |   |                
GACGCTGGTGTTCTACAAGGGTCGCGCCCCCAACGGCCGGAAGACCGACTGGATCATCCACGAGTACCGCCTCCA----ATCAAACGAACACGCCCCTACTCAGgcatgcattgcaa--ccacctattccattccatcttaattttt-tacttctttacttaattatctgtcctactatatatgttaattcatggatattaatatggaatatggatgcag

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G435824_T01 (Zea mays), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGA------CGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcg-------ccgttccacatttccaacc---ccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat----------------------------------------------------------------------------
      ||||   ||||| || ||||| ||||||||||||||||||||||||||||||| ||| || ||      ||||| | || | ||     ||||   |   || ||| |       || |  | |  | | | ||   | ||| |      |   |   | |||||| | |  || |      |        ||  | |   |   || ||                                                                            
------CTACCGCGGCCGCGCCCCTCACGGCCAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGACGACGCCCAGGGCGGCACCAGCgtgcgttgttaattaccttctcgcgctccgatcctagctctctccactaaccactatatatcgatccgcgccgcgtgtttgcatgcgaaatctgagcgcgccattcacatctccgttaattcttgtgttaggttttttttctgtgttgaatgttgatcatgcttgtcgatactgtcgtctgtgcag

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G178998_T01 (Zea mays), 5'ss of exon 4
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCA-GGCATTCCGCGGTTTCGATgtac-gtcgccgttccacatttccaac-cccctcacagtgttc-gtgtccctttcgatcagtgttgcattacca-gaaagcttgcct-cggagatg-ctcccagat
      ||| |||||||| |||||||||||  |||| |||||| | |||||||||||||||||||  || || ||   |  |||| | || ||||| |   |  | ||||| |   |  |   | |  | ||    || |  ||| || |   |   |  |   | | |    |  |   |  |||||| |  | |    ||| |   |||  
GACACTGGTTTTCTACAAAGGCCGGGCGCCCAATGGACAGAAGTCAGACTGGATCATGCACGAGTATCGCCTGGAGACCAACAACAATGGAATTCCACATgtaagttgtacagatcctctagaatacatgcattatccatgtcagcgtcctacgcgtccgttagttattccacctgtctaacaaaagctcgtatgcatgcatgtcattcag--

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G041746_T02 (Zea mays), 5'ss of exon 3
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat--------------
         |||||||||||  ||| ||||||| || ||| ||||||| ||||||||||||||||||| ||| || ||| | |  |||   |   | |  |||    ||  | |  ||| ||  | || |        ||     |||   |  |  | |  ||   |||| | || | ||  | |  ||  | |  ||||     ||               
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCA-Ggtaataataaaggg-gcctttatatatatatcctgatctagtcctgtaaataccgttctttattt-tgtttc-ttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatat

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G041746_T01 (Zea mays), 5'ss of exon 3
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAAC---------CAGGCATTC----CGCGGTTTCGATgtacgt-cgccgttccacatttccaaccccctcacagtgttc-gtgtcc--ctttcgatcag--tgttgcattaccagaaagcttgcctcg-gagatgctcc-cagat
         |||||||||||  ||| ||||||| || ||| ||||||| ||||||||||||||||||| ||| || ||| | |  |||         |||| | |      | ||  |  || ||  |   | | || |    |  ||   ||   |  | ||  || ||   ||  |||||    || |||| | | |     ||    ||  || ||| ||  |||  
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataaaggggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag--

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G099144_T01 (Zea mays), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgc---cgttccacatttccaac---cccctcacagtgttcgtgt-ccctttcg-atcagtgttgcatt---accagaaagcttgcctcggagatgctcccagat----------------------------------------------------------------
 || ||||||   ||||| || ||||| ||||||||| ||||||||||||||||||||| ||| || || |||| | || | ||     ||||   |   |||||| |    | |||    | ||| |    | |  |||  | |   ||| |||   || ||   ||||  |||   |  ||||| ||   |     | |||   ||  |                                                                
CGTCTTCTACCGCGGCCGCGCCCCTCACGGCCAGAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGGACGCCGACGACGCCCAGGGCGGCACCAGCgtacgttgattaccttcttgctctccgatgctctctccactatatatatgtacccggccgtatgcatgtttaatttgcatgagaaatctgagcgaattgttgcctgcatctcagttcttgttagggtttctgtgtgtgctgatcatgcatgcatgtctattaactgtctgttcag

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G354151_T01 (Zea mays), 5'ss of exon 4
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagt--gttgcattaccagaaagc--ttg---cctcggagatgct-cccagat---
 || ||||||| |||||| |||||  | ||||| ||| ||||||||||||||||||||| ||| |||||   |  | |  | |    |||| |   |  |||||||   | | || |  | ||    ||   ||   || ||   ||       | ||   | || |  || |     |  | |   | |||   ||||    ||| |   
-GTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGTGA-CCGCCGCCCC--TGTACgtaagcctgccgccctgcctgatccgatac---gtacgatccctagctagttagcaagctgaacaacaaatcgtccatcgagtcatcgagcatgccattcagctcag

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G315140_T01 (Zea mays), 5'ss of exon 3
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGA--CGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgat--cagtgtt-gcattaccagaaagcttgcctcggagatgctcccagat
       || ||||||| |||||| |||||  | ||||| ||| ||||||||||||||||||||| ||| |||||  | || |  | | ||    || | ||    | |   | |  | |    | |  |  | |  |  |    |  | || |  |   | |  |||  || || |   |     ||  | |     |  | ||      
GACGCTCGTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGGGACCGCCCCTgtacgtaagcttgcctgcttgatgcctagctgaacaacagatctcgagcatgccattcaggctgacagcatttgcttcttcctgttgcccgtcgaatggcggttcag----

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G440219_T01 (Zea mays), 5'ss of exon 2
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCA-GGCATTCCGCGGTTT-----CGATgtacgtcgccgttccacatttccaaccccctca-cagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagat---gctcccagat------------------------------------------
      ||||| |||||||||| | || ||  ||||||| ||| ||||||||||||||||||||| ||| || ||   |    |  | |||  ||| | |        | ||  | || |   |||   | ||  |      |||  | | | | ||      | |||   ||  |||        |   |  | | |   ||   ||   |||||                                          
GACGCTGGTGTACTACAAGGGCAGAGCTCCCAATGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTTGAAACCAATGAGAATGGCCCTCCACAGgcaagaagcaattaatgtagttattcgcaaattaaattatattcagtaatatgcatgcatgcat-gatacctgcagcaaggttgccagcttctcttagtttatccagcctgcagatcagattatcatgaagaaaatatataccatctatatatttcag

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G025642_T02 (Zea mays), 5'ss of exon 3
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATT-CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
       || |||||||||||  |||| ||  | ||||| ||||||||||||||||||||||||| ||| || ||   || | |  | ||    |||| |   | |  | | || ||  | |||| |   | |  ||| | | |   | | | | ||        ||   || ||     |      | || |   |  | | |   
GACGCTCGTCTTCTACAAGGGGAGGGCCCCCAACGGCCACAAGACCGACTGGATCATGCACGAGTACCGCCTCGAGACCGACGAGAATGCGCCGCCGCAGg--caagctccatctcc--ttcacagtg--atctaccttaaattacccatattcattgtatcagatgcaccactaagcatatatactcttctgtt-taattctattc

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G069047_T01 (Zea mays), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTC--CGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtc---cctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
 || ||||||  |||||| ||||| || ||||| ||| |||||||||||||||||||||  || || ||||||    ||   ||   |  ||| |   || |   | |  | |  |  |||        ||  |     | ||   ||    ||| |   |   ||| |  |   ||   |          |  ||         
CGTCTTCTACCGGGGCCGCGCGCCGCACGGCCACAAGTCCGACTGGATCATGCACGAGTATCGCCTGGACGACCCTGACGCCGCCGCCGTCGCCGCCACGgtaagcatgcctgcactgcatgcatgcatcctccggctcgatcagatcagatcttccatccccagttcccctggtagtg-gtagataatataattgtctgt----

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AC212859.3_FGT008 (Zea mays), 5'ss of exon 2
------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTC-CGCGGTT---TCGATgtacgtcgccgt---tccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
      |||||||||||||||| |||| ||  | |||  ||||| |||||||||||||||||||| ||| ||  |   |  | | || |||    ||| |     |  ||  |  | ||| |   |  | |||  |||  |||      |       |  ||  |  |     ||   || |  ||  | | | |    | |           
GACGCTGGTGTTCTACAAGGGCAGGGCACCCAACGGCAGGAAGAGCGACTGGATCATGCACGAGTACCGACTCCAATCCAACGAGCACGCACCGGCGCAGgcaagttcattcatcttgccttgcgtatatattatcaattcccatcggatagctagatggctagctgtggacttttgttttc--gatcggtcgaccaaaaca-----------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA15G42050.1 (Glycine max), 5'ss of exon 4
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat---
          || |||||||  || || || ||||||||||||||||| || ||||||||||| ||||  || || || || |   |       | | |  |||    || |     ||    |||||   ||  | | ||| | | |   ||||| ||    | |   ||  ||||   | |   ||    |  | ||  | |  ||    
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGA-------TGCTGATGTTCAAgtg-agaaaacca---cacatacacatacacttca-attatagatgtccattctcttgatctttagattaagggcacatttttgacaaaaattttacttgagtat

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT1G33280.1 (Arabidopsis thaliana), 5'ss of exon 2
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagt-gttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
          || |||||||| ||  | || ||||||||||| ||||| || |||||||||||||||| |||| | || |||    |  | |      | | | | ||| ||  || |  ||   ||||   ||     | | ||| | |||  |     | ||  |        |   || || ||                       
GAAGACTCTTGTATTCTACAAAGGAAGAGCTCCTCATGGCCAAAAGACAGATTGGATCATGCACGAGTACCGTATCGAAGACACTGAAGATGACCCTTGTg-tatggatatatatctc--ttattcattagaaaatttgtgaaagtcggtcgatttttaattgaataaaccaatctatacataatgcag---------------------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G10350.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattac-cagaaagcttgcctcggagatgctcccagat
 ||||||||||| ||  | || ||||||||||| ||||| || ||||||||||| |||| |||||| || ||||   |  |  |      |        |||| |||     |    ||    |      | | | | |   |     |    || ||  |||||| |        | || | |   | ||| |  |  ||
TGTGTTCTACAAAGGTAGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACGCTGATGATCCTCAAGCCAACCCTAGTgtatgtcttttatttg-atcaatatttaaattataatatagatcagtatcatcattagaattgcataaaatctctggtttccatactatatgttttctaat

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCA-GGCATT--CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
    |||||||  ||  | || ||  | || |||||||||||||||||||||||||||| | | || || || | || |    ||| |  | ||     | ||||| |   |  |   || ||  || |    |     | |     ||   ||   |  || |||  |  |   || ||                       
---TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACATCAGCAGCAGTGGCAGCAACAACAATgtaagatcctctcgtac-ttggcagcttttttcttctataaccctcttatttttttggttttggct--ctgaaatgcag---------------------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ28689 (Selaginella moellendorffii), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACG-GCAACCAGGCATT-CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
||||||||||||||| || || ||  | |||||||||||||||||||| |||||||||| ||| || || |||| ||||    ||||  ||     | |  |    ||    |  |    |   |||||  |         || ||| |  |   | |    || | ||         ||||  ||   |  ||        
GGTGTTCTACAAGGGACGAGCTCCAAACGGCCAGAAGACCGACTGGATAATGCACGAGTACCGCCTCGAGGACGAGCAAAGCAGCATCACCAGCAGTCCTgtaagtgtgatagcactgtgtaagcaaccatccatagaaactcctgtgc--tcaaaccttctttccttttttttttctcttgtttccatgcagcag------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ30650 (Selaginella moellendorffii), 5'ss of exon 2
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACG-GCAACCAGGCATT-CCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
||||||||||||||| || || ||  | |||||||| ||||||||||| |||||||||| ||| || || |||| ||||    ||||  |      | |  |    ||    |  |    |   ||| |  |         || ||| |  |   | |    || | ||         ||||  ||   |  ||        
GGTGTTCTACAAGGGACGAGCTCCAAACGGCCAGAAAACCGACTGGATAATGCACGAGTACCGCCTCGAGGACGAGCAAAGCAGCATCACTAACAGTCCTgtaagtgtgatagcactgtgtaagcaatcatccatagagactcctgtgc--tcaaaccttctttccttttttttctctcttgtttccatgcagcag------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ24736 (Selaginella moellendorffii), 5'ss of exon 2
------------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACG-GCAACCAGGCATTCCGCGGTTTCGATgtacg-tcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
            ||||||||||||||| ||||||||  | || ||||||||||||||||| |||||||||| ||| || || |||| ||||   ||||      | |    |  |    ||    || | ||| |  ||    | |  | | ||||                                                          
GAGGAAGACGCTGGTGTTCTACAAGGGACGGGCGCCAAACGGGCAGAAGACCGACTGGATAATGCACGAGTACCGGCTGGAGGACGAGCAAAGCGGCAGCgtaagctagaaacttggaatctatctttctcatcttaaaagtaccccaatttttcgcag-------------------------------------------------------

upper sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ08057 (Selaginella moellendorffii), 5'ss of exon 2
------------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACG-GCAACCAGGCATTCCGCGGTTTCGATgtacg-tcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat
            ||||||||||||||| ||||||||  | || ||||||||||||||||| |||||||||| ||| || || |||| ||||   ||||      | |    |  |    ||    || | ||| |  ||                                                                           
GAGGAAGACGCTGGTGTTCTACAAGGGACGGGCGCCAAACGGGCAGAAGACCGACTGGATAATGCACGAGTACCGGCTGGAGGACGAGCAAAGCGGCAGCgtaagctagaaacttggaatctatctttctcatcttaaaag-------------------------------------------------------------------------