1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacacaaattgctggtttttcgtttcgtttttctcttaacctatttctcgtgatatttgccactacttgagctctcctactctcatttaccttacctggttcaaaataacagaaagttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
species | Physcomitrella patens |
transcript | PP1S77_324V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGATTTTCTGTATGGAGCGNGAACGATGACCAGTTCCACGATGCTAG GTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGGCA-TTTGATACEST: gi|37826317|gb|BJ584329.1|BJ584329
genomic: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAGgtaacacaaa ... tcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAG-CAATTTGATAC
EST: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAG GTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCEST: gi|162152818|gb|FC328912.1|FC328912
genomic: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAGgtaacacaaa ... tcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACC
EST: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAG GTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACC
genomic: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAGgtaacacaaa ... tcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACC
ttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
gcctgat putative branch site (score: 4)
tttcatttcc putative PPT
aatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacaaattgctggtttttcgtttcgtttttctcttaacctatttctcgtgatatttgccactacttgagctctcctactctcatttaccttacctggttcaaaataacagaaagttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG