Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208376863|gb|DC918776.1|DC918776EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|208367770|gb|DC944016.1|DC944016EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|19789558|gb|BQ041379.1|BQ041379EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|67694807|gb|BJ955040.1|BJ955040EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|208396102|gb|DC924568.1|DC924568EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|162204361|gb|FC380549.1|FC380549EST: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
EST:
gi|208371393|gb|DC955729.1|DC955729EST: CCACTTATTTGTGTAGTACTGTTCGCAC-TNGGCAGATTCTGAATTACAG GGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
genomic: CCACTTATTTGTGTAGTACTGTTCGCACTTGGGCAGATTCTGAATTACAGgtaattgggc ... tttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttttataatttgcctcacaacatgttgctttattacctgtgtttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGGGAAGGACCTTCCATGGGTGGAGAAGTTCCCCTTCGGCTACTTCAGAGAT
gcctcac putative branch site (score: 3)
tttataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctattgtacttatcagttcggcttttgctcagaatttcttcattcttttttttataatttgcctcacaacatgttgctttattacctgtgtttatggcagGGTGTATGATCTGCTGGGGGAAGAAGGAGTATACTACGGAGGGTGCTTTGGGAAGGACCTTCCATGGGTGGAGAAGTTCCCCTTCGGCTACTTCAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT