1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTGTTCATCTGATAATGTAATGCTCAACGAATCTGGTGTGGAATCGGAAGTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGAgtaagttttccctaccgcactgtcatgccacgagtgcttaatcaactgtcatgcactgggaagtctcgatatgtcatagaaaaatcctcgtacttgtcca...
species | Physcomitrella patens |
transcript | PP1S77_278V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGA ATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTCEST: gi|162186192|gb|FC362124.1|FC362124
genomic: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGAgtaagttttc ... gggggtgcagATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTC
EST: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGA ATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTCEST: gi|18373259|gb|BJ204861.1|BJ204861
genomic: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGAgtaagttttc ... gggggtgcagATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTC
EST: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGA ATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTC
genomic: GTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGAgtaagttttc ... gggggtgcagATCTTCACCTAGCTGCAGCTTTCGACAACAATTTGAAGTGGGCACGATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTCATCTGATAATGTAATGCTCAACGAATCTGGTGTGGAATCGGAAGTCAAAGCAGAGGTCGTTCTTAACAAAGCTCCTCAAAATCAAGCCATTGAgtaagttttccctaccgcactgtcatgccacgagtgcttaatcaactgtcatgcactgggaagtctcgatatgtcatagaaaaatcctcgtacttgtcca
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