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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaacctgtagcttcctatacttttctcaatcctacacggcagttttcatactgctatttacttgaattgtgaattgaatctgatcagcctccttggacttgtcatcttgcagTTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGGAGTACTCAGGCTGCACCCCGAGCCAAGGCCTGAAATACACAACTGGAAA

Basic information

species Physcomitrella patens
transcript PP1S77_277V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|150170632|gb|ES492169.1|ES492169
EST:     CTATGACACCTGGTCATCTCAGCAAACGTTCGAGGCAGGAGATAAACTGA                         TTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGG
genomic: CTATGACACCTGGTCATCTCAGCAAACGTTCGAGGCAGGAGATAAACTGAgtgagaacct ... catcttgcagTTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGG
EST: gi|16137529|gb|BI894393.1|BI894393
EST:     CTATGACACCTGGTCATCTCAGCAAACGTTCGAGGCAGGAGATAAACTGA                         TTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGG
genomic: CTATGACACCTGGTCATCTCAGCAAACGTTCGAGGCAGGAGATAAACTGAgtgagaacct ... catcttgcagTTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttgaattgtgaattgaatctgatcagcctccttggacttgtcatcttgcagTTTTCACATATAGCCCAGTACAACACGATGTACAAACCGTGACCGTGTCGGAGTACTCAGGCTGCACCCCGAGCCAAGGCCTGAAATACACAACTGGAAA
                    atctgat  putative branch site (score: 4)
                                            tcatctt  putative PPT
              aattgaat  TA-rich tract