1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttcgaatcctggttccagtatattgttgggcactctggttgacatactcggtgggattgcttggattattgggtggaatcttctggtacttttgagaaacttgtcgccaatctttgactggattgctggtgcttagcgctttggacaagtctcaagtgatcttgttgtgcatctgcagATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACATTACAATGGCATCTTTTAAGGAAGTCCATTTTGGAAATCATTTCGCCTT
species | Physcomitrella patens |
transcript | PP1S77_257V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGAGGCCCTCCAGAATCTGTCTTTCTACTGCCACATTGTCGTCGTTAC ATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACAEST: gi|37840003|gb|BJ598011.1|BJ598011
genomic: CATGAGGCCCTCCAGAATCTGTCTTTCTACTGCCACATTGTCGTCGTTACgtaagtttcg ... gcatctgcagATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACA
EST: CATGAGGCCCTCCAGAATCTGTCTTTCTACTGCCACATTGTCGTCGTTAC ATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACA
genomic: CATGAGGCCCTCCAGAATCTGTCTTTCTACTGCCACATTGTCGTCGTTACgtaagtttcg ... gcatctgcagATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcgaatcctggttccagtatattgttgggcactctggttgacatactcggtgggattgcttggattattgggtggaatcttctggtacttttgagaaacttgtcgccaatctttgactggattgctggtgcttagcgctttggacaagtctcaagtgatcttgttgtgcatctgcagATCCCGACAGCATGTCATAAGGCAGCCAACCTTGGATTGGATCAATCAACATTACAATGGCATCTTTTAAGGAAGTCCATTTTGGAAATCATTTCGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA