1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTCTTGGTGTTTGGCGCTGGTTCTCGTTCCTGCATTGGGTCCAGCTTGGCAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAGgtgaatgctctatcccactctcttcatatctaaattgtagacatcactggttacaatcactgaaatctgattttcgaattcatcgttagatcttcaacaacgctaacgattccttctgattgacctgttaatag
species | Physcomitrella patens |
transcript | PP1S77_22V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGAAGCGATTCGAG CTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGCEST: gi|162268744|gb|FC445241.1|FC445241
genomic: CTTGAAGCGATTCGAGgtgaatgctc ... ctgttaatagCTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGC
EST: CAGTGAAGCANATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAG CTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACTGAAA-CATGAGEST: gi|162268743|gb|FC445240.1|FC445240
genomic: CAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAGgtgaatgctc ... ctgttaatagCTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTAC-GAAAACATGAG
EST: CAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAG CTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGCEST: gi|162175242|gb|FC351440.1|FC351440
genomic: CAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAGgtgaatgctc ... ctgttaatagCTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGC
EST: CAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAG CTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGC
genomic: CAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAGgtgaatgctc ... ctgttaatagCTGAAGGAGAATTTTGATAGCTCCGATGCCAAAGCCTACGAAAACATGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTGGTGTTTGGCGCTGGTTCTCGTTCCTGCATTGGGTCCAGCTTGGCAGTGAAGCAAATCAGCATCCTTGTGACCGTTATCTTGAAGCGATTCGAGgtgaatgctctatcccactctcttcatatctaaattgtagacatcactggttacaatcactgaaatctgattttcgaattcatcgttagatcttcaacaacgctaacgattccttctgattgacctgttaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC