Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaggaactctttctttgtttttgattctgtttccagatctgtaagagttgaagtgaacaatcgacgtgccagaagcaaggttcacctcatccttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTCTTGTTCTCTTGCTTCTAAGCGCTACCGTCATGGCCGTGACGGCGGACGT

Basic information

species Physcomitrella patens
transcript PP1S77_225V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277667|gb|FC453298.1|FC453298
EST:     AGCCACTGCATACTCCCTTTTCAAACATAGCAAAGATTTTCTAGAGC---                         --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AGCCACTGCATACT-CCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST: gi|162244546|gb|FC425397.1|FC425397
EST:     AGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAG                         TGTTTTTGACAGGTTTTATTNTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST: gi|67694690|gb|BJ954923.1|BJ954923
EST:     CCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC---                         --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: CCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST: gi|162244547|gb|FC425398.1|FC425398
EST:     AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAG                         TGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST: gi|162277666|gb|FC453297.1|FC453297
EST:     AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC---                         --------A-AGGTTTTATTNTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
EST: gi|67699892|gb|BJ960125.1|BJ960125
EST:     AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGC---                         --------A-AGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC
genomic: AAGCCACTGCATACTCCTTTTCAAACATAGCAAAGATTTTCTAGAGCAAGgtaagcagga ... ttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagtgaacaatcgacgtgccagaagcaaggttcacctcatccttggcgctagTGTTTTTGACAGGTTTTATTTTGATACGCGAGATGGGCTCCTCAAGGGTTCTTGTTCTCTTGCTTCTAAGCGCTACCGTCATGGCCGTGACGGCGGACGT
                                 ttcacctcatcctt  CT-rich tract