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...gcgtgacttaatggagacgtgacataagagtacatggctggacgccggatgaattagcttgattttttctttgacgagtcgtggcctggattgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGGGATTGGCGGCAGATGGCTGCAGTGAAGATGTCAACGGAATACGACTCCG
species | Physcomitrella patens |
transcript | PP1S6_239V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAG GTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGGEST: gi|18369014|gb|BJ201099.1|BJ201099
genomic: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAGgtgcgaggct ... ttgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGG
EST: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAN GTGGTTGCTATGGGTGACGCGGCGCANGTTCGGATGCCAGAAGGACAATGGEST: gi|100386366|gb|BY988033.1|BY988033
genomic: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAGgtgcgaggct ... ttgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGG
EST: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAG GTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGGEST: gi|100368622|gb|BY967097.1|BY967097
genomic: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAGgtgcgaggct ... ttgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGG
EST: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAG GTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGG
genomic: GTTTTGAGGTTCCTCGGCGGCTTTGGGTTTCATTTTTCCATTGCGACCAGgtgcgaggct ... ttgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGG
cggatgaattagcttgattttttctttgacgagtcgtggcctggattgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGGGATTGGCGGCAGATGGCTGCAGTGAAGATGTCAACGGAATACGACTCCG
ctttgac putative branch site (score: 4)
ttgattttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtgacttaatggagacgtgacataagagtacatggctggacgccggatgaattagcttgattttttctttgacgagtcgtggcctggattgggggcagGTGGTTGCTATGGGTGGCGCGGCGCAGGTTCGGATGCCAGAAGGACAATGGGATTGGCGGCAGATGGCTGCAGTGAAGATGTCAACGGAATACGACTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG