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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatcaggtcattgttagtagttttcttcactagcagcgtaatgcattgcccatactgcattgtgtcactgagttttggaattccttcctttgtacgtagatggataagaatctttatttgacaccatttgtttgtgggtggaagcagATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGGCTTGATATTTTCGTCTTTTGTGTTATTTTTCTTTGACGTTCCTGTTTCAATACG

Basic information

species Physcomitrella patens
transcript PP1S6_214V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100451438|gb|CJ974766.1|CJ974766
EST:     AGGCGGCGACTGGAGATTATTTCCAGCCTCACTGAGTTGGTTTAGTGACG                         ATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGG
genomic: AGGCGGCGACTGGAGATTATTTCCAGCCTCACTGAGTTGGTTTAGTGACGgtaagctatc ... gtggaagcagATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGG
EST: gi|162235927|gb|FC411670.1|FC411670
EST:     AGGCGGCGACTGGAGATTATTTCCAGCCTCACTGAGTTGGTTTAGTGACG                         ATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGGCTTGA
genomic: AGGCGGCGACTGGAGATTATTTCCAGCCTCACTGAGTTGGTTTAGTGACGgtaagctatc ... gtggaagcagATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgtagatggataagaatctttatttgacaccatttgtttgtgggtggaagcagATTCATCATTCATCTCAAGCATCAGATTAAATTCTGGTCCTACAGGCTTGATATTTTCGTCTTTTGTGTTATTTTTCTTTGACGTTCCTGTTTCAATACG
                       atttgac  putative branch site (score: 4)
           ataagaatctttattt  TA-rich tract