Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag

Basic information

species Physcomitrella patens
transcript PP1S6_198V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag
||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||  | || ||| |||| |||||     | | |||  |         | | | ||    ||     |   ||||||   | | || |  |  ||||   |||   |||     | |     ||   | | |||  || ||   |        |                                                                    
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgt----tagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcacttt--gagattggtggtgacaag--------------------------------------------------------------------

upper sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 3
GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag
||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||  | || ||| |||| |||||     | | |||  |         | | | ||    ||     |   ||||||   | | || |  |  ||||   |||   |||     | |                                                                                                         
GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgt----tagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcag-------------------------------------------------------------------------------------------------------

upper sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G05670.1 (Glycine max), 5'ss of exon 3
GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattttgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag
||||| ||||| ||||||||||| || |||||||| ||||||| ||||||||||||  | || ||| |||| |||||         || | | | |   | | | |||  | ||      | | |||||||  | | || |  |  |||| | |    ||    | ||  | | | |                                                                                                  
GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgt---------tagtatatggaaagcaatggat--gcttttttggt-tccatgtggtgtgtggctaatgg-ttgttagttcctgt----ctatgttgtgcag--------------------------------------------------------------------------------------------------

upper sequence: PP1S6_198V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 3
GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaa----ttcaatctattttcttgctggtagttgattggtttgacaaatattcatgtggaattt-tgcaacggaattgtcattgtaggtgtaaccattctctcctgtccgtattttctgaaatctttatcatttcgccgatcaaataatcactaggaacgtaccccacttcaaagagtctaacacatgacttggtactctgcag
||||||||||| ||||||||||| || ||| | |||||||||| |||||| || ||  | |||||||| |||||||| |     | || ||         ||  |  ||   ||  ||      ||  |   |    |||   |||| ||||| |  ||||   || ||      | | | |                                                                                                  
GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGgtcagagtcttaacctcaagctacacttttcttttcctgccttttgtgttacaccccttacttttacacaactgaatttttgttgt---tgcaattgggttttgcag--------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67709844|gb|BJ965660.1|BJ965660
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162239317|gb|FC415403.1|FC415403
EST:     AGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: AGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|7582814|gb|AW699031.1|AW699031
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162248096|gb|FC420101.1|FC420101
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|18369053|gb|BJ201138.1|BJ201138
EST:     TCANGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGA
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGA
EST: gi|7147838|gb|AW509760.1|AW509760
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162250013|gb|FC427114.1|FC427114
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162209881|gb|FC386023.1|FC386023
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|37847272|gb|BJ605280.1|BJ605280
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162202561|gb|FC379244.1|FC379244
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162245704|gb|FC419604.1|FC419604
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|15320137|gb|BI487750.1|BI487750
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|15729018|gb|BI741095.1|BI741095
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|18327147|gb|BJ159148.1|BJ159148
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|18369077|gb|BJ201162.1|BJ201162
EST:     TCANGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162253005|gb|FC429066.1|FC429066
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|18366870|gb|BJ198950.1|BJ198950
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162202562|gb|FC379245.1|FC379245
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162213753|gb|FC390368.1|FC390368
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|15327299|gb|BI487887.1|BI487887
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGANGACA-GAAGGGTAAGGGCACTCA
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGA-GACAAGAAGGGTAAGGGCACTCA
EST: gi|162253004|gb|FC429065.1|FC429065
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|18335425|gb|BJ167444.1|BJ167444
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162203006|gb|FC380078.1|FC380078
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|67572978|gb|BJ945802.1|BJ945802
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162245986|gb|FC421875.1|FC421875
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162209880|gb|FC386022.1|FC386022
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162211965|gb|FC388045.1|FC388045
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|67721923|gb|BJ972182.1|BJ972182
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|6167609|gb|AW145873.1|AW145873
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|7047264|gb|AW477158.1|AW477158
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|67703412|gb|BJ963645.1|BJ963645
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTG
EST: gi|67723922|gb|BJ974181.1|BJ974181
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|15320178|gb|BI487827.1|BI487827
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAATGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162213754|gb|FC390369.1|FC390369
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162249941|gb|FC427042.1|FC427042
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|37850368|gb|BJ608376.1|BJ608376
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|67696359|gb|BJ956592.1|BJ956592
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
EST: gi|162203414|gb|FC378822.1|FC378822
EST:     TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG                         CGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG
genomic: TCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 44

GCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAGgtaattcaat ... tactctgcagCGATGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGTAAGGGCACTCAGCTCTTCTAGGCAACTCGATTGGATTACCTCGCTTCTGAACTTTAGAGAG




<











<


<