1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatggccaaatcatccctagagagacttgtgtaattgaggcgatctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG
species | Physcomitrella patens |
transcript | PP1S6_194V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTEST: gi|162192965|gb|FC371948.1|FC371948
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCT
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162183888|gb|FC360194.1|FC360194
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|100403161|gb|BY991065.1|BY991065
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAANGAACAATGGATTCAGACTGTTGAGAGTANGATCGAANAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162264351|gb|FC440517.1|FC440517
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162254308|gb|FC430443.1|FC430443
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162168288|gb|FC344602.1|FC344602
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162228323|gb|FC404376.1|FC404376
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162168368|gb|FC344682.1|FC344682
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|100390042|gb|BY989122.1|BY989122
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCGGGTTCCTTACCCTGACTGCGEST: gi|100443443|gb|BY981870.1|BY981870
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCG
EST: TTGGGGCA-GGAAACA-TGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTC-TTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162184316|gb|FC359712.1|FC359712
genomic: TTGGG-CAAGGAA-CAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162162785|gb|FC337839.1|FC337839
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162265401|gb|FC440727.1|FC440727
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATEST: gi|162189669|gb|FC366307.1|FC366307
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGAT
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCEST: gi|162152960|gb|FC329262.1|FC329262
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCC
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162276264|gb|FC452098.1|FC452098
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162198166|gb|FC373090.1|FC373090
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162266717|gb|FC442038.1|FC442038
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTANGATCGAANAG GCTATTTTTGATTTCCGGTTCEST: gi|208375595|gb|DC902812.1|DC902812
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTC
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|100378828|gb|BY968709.1|BY968709
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTEST: gi|100445919|gb|CJ970218.1|CJ970218
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTT
EST: CTTTGGGCAAGGAACAATGGATTCANACTGTTGAGAGTANGATCNAAAAG GCTATTTT-GATTTCCGGTTCCTTACCCTGACTGCNATCGTTGEST: gi|100352991|gb|BY945552.1|BY945552
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTG
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGT-CCNNTACCCTGACTGCGATCNGT-GGCTCGT
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCT-TACCCTGACTGCGATC-GTTGGCTCGT
atctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG
gcctaat putative branch site (score: 3)
taatctatatt TA-rich tract