1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAGTTGGATTTCGGCGACAGTGTCTGTGGTGCTGTTTTGAGCATTCGTTTTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtcagttcaggccccacaatttcttctcttacagaggacacttcccttgttacttatcaagttgtatatccttatgctcctacaatgcgttca...
species | Physcomitrella patens |
transcript | PP1S6_173V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|67726582|gb|BJ976841.1|BJ976841
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208346475|gb|DC917428.1|DC917428
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208395942|gb|DC915702.1|DC915702
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208370208|gb|DC952030.1|DC952030
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|67696865|gb|BJ957098.1|BJ957098
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|67725755|gb|BJ976014.1|BJ976014
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|162232709|gb|FC408116.1|FC408116
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|37824112|gb|BJ582178.1|BJ582178
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208393913|gb|DC946123.1|DC946123
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208399428|gb|DC924858.1|DC924858
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|162232708|gb|FC408115.1|FC408115
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|37826519|gb|BJ584531.1|BJ584531
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208349443|gb|DC921931.1|DC921931
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208373323|gb|DC944966.1|DC944966
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|37846680|gb|BJ604688.1|BJ604688
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|37826548|gb|BJ584560.1|BJ584560
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTTTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATNEST: gi|37850883|gb|BJ608891.1|BJ608891
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|67726544|gb|BJ976803.1|BJ976803
genomic: TGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTT-CTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208397369|gb|DC916323.1|DC916323
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATTEST: gi|208382280|gb|DC919268.1|DC919268
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
EST: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAG GCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
genomic: TTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtc ... tcatgtgcagGCTGTCATGGCTCTTCGTGATTCAATTAAGCGGCACCTTCATTTGCCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTTGGATTTCGGCGACAGTGTCTGTGGTGCTGTTTTGAGCATTCGTTTTGGGGAGGACATCCTTAGCATATGGAACCGCAATGCTTCTGATAATCAGgtacagcgtcagttcaggccccacaatttcttctcttacagaggacacttcccttgttacttatcaagttgtatatccttatgctcctacaatgcgttca
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