1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagttatacaagcttggcataaaatggtagcgaatccgatttaatgcttaaatcgtgttacccgtgttgagccgattcctttgttacgaattttgactgctttcattatgaaacatccatgttgcttctttcatgtgaacgtctaaatataagctgcatgcttctcttttctgtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAGCTATGAAGCTTCACAGGAAATACCTACGCAGG
species | Physcomitrella patens |
transcript | PP1S6_170V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAG CTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAEST: gi|208371362|gb|DC952123.1|DC952123
genomic: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAGgtcagttata ... gtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCA
EST: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAG CTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAEST: gi|15261493|gb|BI436803.1|BI436803
genomic: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAGgtcagttata ... gtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCA
EST: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAG CTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAEST: gi|162209574|gb|FC385878.1|FC385878
genomic: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAGgtcagttata ... gtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCA
EST: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAG CTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCA
genomic: AACGTCACCGACTACTGAAAGAGACTCAAGGATTAGACGAAGTGTTAAAGgtcagttata ... gtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCA
ctttcatgtgaacgtctaaatataagctgcatgcttctcttttctgtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAGCTATGAAGCTTCACAGGAAATACCTACGCAGG
gtctaaa putative branch site (score: 7)
catgcttctcttttct putative PPT
tctaaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttatacaagcttggcataaaatggtagcgaatccgatttaatgcttaaatcgtgttacccgtgttgagccgattcctttgttacgaattttgactgctttcattatgaaacatccatgttgcttctttcatgtgaacgtctaaatataagctgcatgcttctcttttctgtttttgcagCTGCTGAATGACATAACTGGGAAGGTCGACCCTAAGGAAGCTTGCAAAGCAGCTATGAAGCTTCACAGGAAATACCTACGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC