1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaggttaattcctttatttgtcacagcggtcactcgttttgatgacgataatcttgttcaatctaccctattgctactgacattttgttccattttgaagCCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCAGCGGGAAGTTCTGAGAGTGTCGAGCTCTTGATAAAG
species | Physcomitrella patens |
transcript | PP1S6_158V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCATGATCATCCCAAAGCAGTCAAACTCCTTCTTGACAGTGGTGCTAAT CCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCAEST: gi|162157242|gb|FC332876.1|FC332876
genomic: GCCATGATCATCCCAAAGCAGTCAAACTCCTTCTTGACAGTGGTGCTAATgtaaagccct ... cattttgaagCCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCA
EST: GCCATGATCATCCCAAAGCAGTCAAACTCCTTCTTGACAGTGGTGCTAAT CCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCA
genomic: GCCATGATCATCCCAAAGCAGTCAAACTCCTTCTTGACAGTGGTGCTAATgtaaagccct ... cattttgaagCCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCA
cgataatcttgttcaatctaccctattgctactgacattttgttccattttgaagCCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCAGCGGGAAGTTCTGAGAGTGTCGAGCTCTTGATAAAG
tactgac putative branch site (score: 1)
ttttgttccatttt CT-rich tract
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggttaattcctttatttgtcacagcggtcactcgttttgatgacgataatcttgttcaatctaccctattgctactgacattttgttccattttgaagCCTAACGGTGCTACAGATGATGATGTGACCGCTCTGGTCACGGCAGCTGCAGCGGGAAGTTCTGAGAGTGTCGAGCTCTTGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG