1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCATCGTGACTCTTGGGCCTTTTTGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaattcatatctgcatctgaatgatattatttcttgctggaaatttgtgcagaaactctgtcgttaatgcatcgaattgtagtggctagtgta...
species | Physcomitrella patens |
transcript | PP1S6_148V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|18333415|gb|BJ165430.1|BJ165430
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GTTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162220971|gb|FC396156.1|FC396156
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|37831998|gb|BJ590010.1|BJ590010
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|37826992|gb|BJ585004.1|BJ585004
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162273081|gb|FC447775.1|FC447775
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|208370955|gb|DC944330.1|DC944330
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|208377435|gb|DC927081.1|DC927081
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|37850462|gb|BJ608470.1|BJ608470
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162190183|gb|FC365925.1|FC365925
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|18335178|gb|BJ167196.1|BJ167196
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|67722002|gb|BJ972261.1|BJ972261
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|208351093|gb|DC921339.1|DC921339
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162274451|gb|FC450686.1|FC450686
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|37835873|gb|BJ593885.1|BJ593885
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|18334705|gb|BJ166722.1|BJ166722
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|208363381|gb|DC946979.1|DC946979
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|208382343|gb|DC919331.1|DC919331
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162161862|gb|FC337951.1|FC337951
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCTEST: gi|162211281|gb|FC387511.1|FC387511
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
EST: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAG GCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
genomic: TGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaa ... tgcaatgcagGCTTCGCAATTGGCGCAGGCTGTCGGCATGGGTTTGAGCAATTCACTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATCGTGACTCTTGGGCCTTTTTGGAGCGCAGGATAAAGGATGCTATTGATTGCAGAAAGACTGCACAAGAGgtcattacaattcatatctgcatctgaatgatattatttcttgctggaaatttgtgcagaaactctgtcgttaatgcatcgaattgtagtggctagtgta
- - - - - - - - - - - - - - - - - - - AGGATG