1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTGCCTTTCATAACCGCCACGGCGGATGGACCGAAGCACATCGATACCACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAGgtatgttacaaaatactagagtgaaaaatacttcttttctgtgtgcgagttagtcggttttatgtgttttagatatcttttagcaacgtgtaatggtgcagctctgcttgtctacgtcatggacggtgtctcattttcaaagttgatatcacag
species | Physcomitrella patens |
transcript | PP1S6_146V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAG GTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAGEST: gi|162181462|gb|FC358076.1|FC358076
genomic: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAGgtatgttaca ... gatatcacagGTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAG
EST: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAG GTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAGEST: gi|162246522|gb|FC419980.1|FC419980
genomic: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAGgtatgttaca ... gatatcacagGTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAG
EST: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAG GTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAG
genomic: ACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAGgtatgttaca ... gatatcacagGTGTAAGACTCCAGTAGAGAACGCCTTGAGAGATGCTAAGTTGAGCTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCCTTTCATAACCGCCACGGCGGATGGACCGAAGCACATCGATACCACGTTGACCAGAGCCAAATTCGAGGAGCTGTGCTCTGACCTACTTGACAGgtatgttacaaaatactagagtgaaaaatacttcttttctgtgtgcgagttagtcggttttatgtgttttagatatcttttagcaacgtgtaatggtgcagctctgcttgtctacgtcatggacggtgtctcattttcaaagttgatatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT