1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtacacgaccatggtgctggagggtttgacaaaactgttgtcgtgtcgatggtcgccggtcgccggaggtctgaacaacgtgaggcatggttgttgcagGAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAAATCAAGACCGTGGACTCTCAGGACTCGCTGAATGGTGGAGTGTTGGTTC
species | Physcomitrella patens |
transcript | PP1S6_137V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCCGAAGAAGGAGCTGATGGTGCCGTGGACACCGTTTTCACTCAAAAG GAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAAEST: gi|100447389|gb|CJ971688.1|CJ971688
genomic: GGGCCGAAGAAGGAGCTGATGGTGCCGTGGACACCGTTTTCACTCAAAAGgtgagcagta ... gttgttgcagGAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAA
EST: GGGCCGAAGAAGGAGCTGATGGTGCCGTGGACACCGTTTTCACTCAAAAG GAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAA
genomic: GGGCCGAAGAAGGAGCTGATGGTGCCGTGGACACCGTTTTCACTCAAAAGgtgagcagta ... gttgttgcagGAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacacgaccatggtgctggagggtttgacaaaactgttgtcgtgtcgatggtcgccggtcgccggaggtctgaacaacgtgaggcatggttgttgcagGAAATACACCAGAAAGTGATGTCGTTGGACTACAGCCAACTGAAGGCAGAAATCAAGACCGTGGACTCTCAGGACTCGCTGAATGGTGGAGTGTTGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - -tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaca