1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGGCCGAACGTCCTGCAGCCAGTGCAACGGCATCTCCAGCTCCTGCGACAGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaagtgggtgggtgtgtggtggcaaaattgtggggatgaacgtgagaagagggggtagtgtagcatgagattattgcgccaacgagtggagag...
species | Physcomitrella patens |
transcript | PP1S6_129V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTCCTTCACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAG CTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCACEST: gi|162274554|gb|FC450997.1|FC450997
genomic: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaa ... ttggatgcagCTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCAC
EST: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAG CTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCACEST: gi|162218885|gb|FC394428.1|FC394428
genomic: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaa ... ttggatgcagCTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCAC
EST: AGCTCCTTCACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAG CTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCACEST: gi|162274553|gb|FC450996.1|FC450996
genomic: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaa ... ttggatgcagCTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCAC
EST: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAG CTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCAC
genomic: AGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaa ... ttggatgcagCTGACGGGCGGTCAGTGTACGTGAAGAATCTGCCGATGAACACCACGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCCGAACGTCCTGCAGCCAGTGCAACGGCATCTCCAGCTCCTGCGACAGCTCCTACACAGGAAGTGCAGGAAGAGAGCGCACCTGTGGAAAACGAAGgtgtgtggaagtgggtgggtgtgtggtggcaaaattgtggggatgaacgtgagaagagggggtagtgtagcatgagattattgcgccaacgagtggagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA