1 5' 3' | 2 5' 3' |
...gtgtccaattgagatcgttgttctcgggaagccttcacgtgacggtgtcttagtgtggcagccgttatcagaaattgaccagagtgggatattctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGGATCCTTTGGTGCAATTCATCCCCGTCATAGGACAGATTTACAACTCCA
species | Physcomitrella patens |
transcript | PP1S6_103V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGEST: gi|162279014|gb|FC454753.1|FC454753
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGEST: gi|162275098|gb|FC451685.1|FC451685
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGEST: gi|208389309|gb|DC933337.1|DC933337
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGEST: gi|162275097|gb|FC451684.1|FC451684
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGEST: gi|208368917|gb|DC947475.1|DC947475
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
EST: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTG AAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
genomic: CCATAAACTTGGAGCTCTTTGCATTACTCGAACTTGAAGATGTTATAGTGgtgcgttcgt ... attctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGG
tgtcttagtgtggcagccgttatcagaaattgaccagagtgggatattctggcagAAAGGGCAAACGGTCAAGAAGGTGAAAGTGCAGCGCGATTACTTCCAGCGGGATCCTTTGGTGCAATTCATCCCCGTCATAGGACAGATTTACAACTCCA
aattgac putative branch site (score: 4)
agaaatt TA-rich tract