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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttggttcaagcttctcttccccaattttccaaattaatcctacaatgctcaccctcatggttaaaaagtaatgatgaacggttgcactcagagaagcgtgtatagccattcctgattgttttagtacgtgctgtgtgaataacatgatgaagaggaactttgctgtgcagGAAGCGAGGCGATGTTTGCAGATTTGGGCCATTTTACTGTCAAGTCAATGCAGGTTGCCTTCACATTCTTGGTGTTCCCGTCTCTCCTATGTGCATACAT

Basic information

species Physcomitrella patens
transcript PP1S6_102V6.2
intron # 7
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttagtacgtgctgtgtgaataacatgatgaagaggaactttgctgtgcagGAAGCGAGGCGATGTTTGCAGATTTGGGCCATTTTACTGTCAAGTCAATGCAGGTTGCCTTCACATTCTTGGTGTTCCCGTCTCTCCTATGTGCATACAT
                     gaataac  putative branch site (score: 2)
                                          ctttgct  putative PPT
                      aataacat  TA-rich tract