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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtcgtccctttcatagttttctctgaaccatttgttgcacttcgcaagatttagtgccaaacccaaattcgactctcataccgaaaacggtttcaaatttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAATCCAAACAAGTCGGATTGAGCCCTTGCATCGCTGCATCGTCCAAGTTGAT

Basic information

species Physcomitrella patens
transcript PP1S69_87V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270030|gb|FC446730.1|FC446730
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162269988|gb|FC445453.1|FC445453
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162265698|gb|FC443104.1|FC443104
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162268302|gb|FC444591.1|FC444591
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162270031|gb|FC446731.1|FC446731
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162265699|gb|FC443105.1|FC443105
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162272486|gb|FC448488.1|FC448488
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162259358|gb|FC435716.1|FC435716
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|67574105|gb|BJ946929.1|BJ946929
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162266266|gb|FC442198.1|FC442198
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|67697497|gb|BJ957730.1|BJ957730
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162272386|gb|FC449038.1|FC449038
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162273356|gb|FC449597.1|FC449597
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162269989|gb|FC445454.1|FC445454
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162271098|gb|FC447139.1|FC447139
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|67578078|gb|BJ950245.1|BJ950245
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162273355|gb|FC449596.1|FC449596
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|162272385|gb|FC449037.1|FC449037
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|67575864|gb|BJ948688.1|BJ948688
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
EST: gi|67700942|gb|BJ961175.1|BJ961175
EST:     AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAG                         GCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT
genomic: AAGACAAGGGGATCCAAGCCAAAGACGGCGTCAGCCGCATGGTGACGCAGgtgcgtcgtc ... ttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccaaacccaaattcgactctcataccgaaaacggtttcaaatttgtgcacagGCTGGGGATGCAATTGGCAATGCAGCTCAGTCGGTGGCAGATACCGTTAATCCAAACAAGTCGGATTGAGCCCTTGCATCGCTGCATCGTCCAAGTTGAT
                                     tttcaaattt  TA-rich tract