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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacaaccgttttgcatctactattcatgcatgaaaatgggaaagtataattttggaaagattagtgaatgttgacatctttatgttaatcaattgaccagTTTGCAGGTGTAGATCCATGGGAATAACAGACAATGGAGGTGCTTCTATCTTTGCAATTGACTACAGACTCAATAGCGGCCATAGGAAAAGTCCTACAAA

Basic information

species Physcomitrella patens
transcript PP1S69_7V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18335431|gb|BJ167451.1|BJ167451
EST:     GGTACACAATACACTGTTAGCACTTGGGACGACTTCGTTAGCACAACGAG                         TTTGCAGGTGTAGATCCATGGGAATAACAGACAATGGAGGTGCTTCTATCT
genomic: GGTACACAATACACTGTTAGCACTTGGGACGACTTCGTTAGCACAACGAGgtagacgtac ... aattgaccagTTTGCAGGTGTAGATCCATGGGAATAACAGACAATGGAGGTGCTTCTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattttggaaagattagtgaatgttgacatctttatgttaatcaattgaccagTTTGCAGGTGTAGATCCATGGGAATAACAGACAATGGAGGTGCTTCTATCTTTGCAATTGACTACAGACTCAATAGCGGCCATAGGAAAAGTCCTACAAA
                                     tgttaat  putative branch site (score: 3)
                                 tttatgttaatcaatt  TA-rich tract